ClusterFunction-methods: Helper methods for the ClusterFunction class

Description Usage Arguments Details

Description

This is a collection of helper methods for the ClusterExperiment class.

Usage

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## S4 method for signature 'character'
requiredArgs(object)

## S4 method for signature 'ClusterFunction'
requiredArgs(object, genericOnly = FALSE)

## S4 method for signature 'character'
requiredArgs(object)

## S4 method for signature 'character'
requiredArgs(object)

## S4 method for signature 'factor'
requiredArgs(object)

## S4 method for signature 'ClusterFunction'
algorithmType(object)

## S4 method for signature 'character'
algorithmType(object)

## S4 method for signature 'factor'
algorithmType(object)

## S4 method for signature 'ClusterFunction'
inputType(object)

## S4 method for signature 'character'
inputType(object)

## S4 method for signature 'factor'
inputType(object)

Arguments

object

input to the method, usually either a ClusterFunction class or a character describing a built-in ClusterFunction object.

genericOnly

logical If TRUE, return only the generic required arguments (i.e. those required by the algorithm type) and not the arguments specific to that clustering found in the slot requiredArgs. If FALSE both sets of arguments are returned.

Details

Note that when subsetting the data, the dendrogram information and the co-clustering matrix are lost.


Bioconductor-mirror/clusterExperiment documentation built on Aug. 2, 2017, 4:28 p.m.