API for Bioconductor-mirror/clusterProfiler
statistical analysis and visualization of functional profiles for genes and gene clusters

Global functions
DataSet Man page
GI2EG Source code
GSEA Man page Source code
Gff2GeneTable Man page Source code
KEGGPATHID2EXTID Source code
KEGG_convert Source code
KEGG_extid2path Source code
KEGG_path2extid Man page Source code
add_GO_Ontology Source code
as.data.frame.compareClusterResult Source code
barplot.compareClusterResult Source code
bitr Man page Source code
bitr_kegg Man page Source code
browseKEGG Man page Source code
buildGOmap Man page Source code
clusterProfiler Man page
clusterProfiler-package Man page
compareCluster Man page Source code
compareClusterResult-class Man page
dim.compareClusterResult Source code
dotplot,compareClusterResult,ANY-method Man page
dotplot,compareClusterResult-method Man page
dotplot.compareClusterResult Source code
download.KEGG.Module Source code
download.KEGG.Path Source code
download_KEGG Man page Source code
dropGO Man page Source code
enrichDAVID Man page Source code
enrichGO Man page Source code
enrichKEGG Man page Source code
enrichMKEGG Man page Source code
enricher Man page Source code
excludeGOlevel Source code
excludeGOterm Source code
fortify.compareClusterResult Man page Source code
gcSample Man page
geneID.groupGOResult Source code
geneInCategory.groupGOResult Source code
getGOLevel Man page Source code
getGffAttribution Source code
get_GO2Ontology_table Source code
get_GO2TERM_table Source code
get_GOTERM Source code
get_GO_Env Source code
get_GO_data Source code
get_KEGG_Env Source code
get_KEGG_db Source code
get_data_from_KEGG_db Source code
get_go_ontology Source code
get_kegg_species Source code
get_species_name Source code
get_species_name_idx Source code
go2ont Man page Source code
go2term Man page Source code
gofilter Man page Source code
groupGO Man page Source code
groupGOResult-class Man page
gseGO Man page Source code
gseKEGG Man page Source code
gseMKEGG Man page Source code
head.compareClusterResult Source code
idType Man page Source code
keepGOlevel Source code
keepGOterm Source code
kegg_link Source code
kegg_list Source code
kegg_rest Source code
kegg_species Man page
kegg_species_data Source code
merge_result Man page Source code
onAttach Source code
organismMapper Source code
plot Man page
plot,compareClusterResult,ANY-method Man page
plot,compareClusterResult-method Man page
plotGOgraph Man page Source code
plotting.clusterProfile Man page Source code
prepare_KEGG Source code
read.gmt Man page Source code
readGff Source code
removeEmptyEntry.list Source code
search_kegg_organism Man page Source code
show,compareClusterResult-method Man page
show,groupGOResult-method Man page
simplify Man page
simplify,compareClusterResult-method Man page
simplify,enrichResult-method Man page
simplify_internal Source code
summary,compareClusterResult-method Man page
tail.compareClusterResult Source code
viewKEGG Man page Source code
Bioconductor-mirror/clusterProfiler documentation built on July 28, 2017, 5:21 a.m.