Man pages for Bioconductor-mirror/clusterProfiler
statistical analysis and visualization of functional profiles for genes and gene clusters

bitrbitr
bitr_keggbitr_kegg
browseKEGGbrowseKEGG
buildGOmapbuildGOmap
clusterProfiler-packagestatistical analysis and visualization of functional profiles...
compareClusterCompare gene clusters functional profile
compareClusterResult-classClass "compareClusterResult" This class represents the...
DataSetDatasets gcSample contains a sample of gene clusters.
dotplot-methodsdotplot
download_KEGGdownload_KEGG
dropGOdropGO
enrichDAVIDenrichDAVID
enricherenricher
enrichGOGO Enrichment Analysis of a gene set. Given a vector of...
enrichKEGGKEGG Enrichment Analysis of a gene set. Given a vector of...
enrichMKEGGKEGG Module Enrichment Analysis of a gene set. Given a vector...
fortifyfortify
getGOLevelget GOIDs at a specific level
Gff2GeneTableGff2GeneTable
go2ontgo2ont
go2termgo2term
gofiltergofilter
groupGOFunctional Profile of a gene set at specific GO level. Given...
groupGOResult-classClass "groupGOResult" This class represents the result of...
GSEAGSEA
gseGOgseGO
gseKEGGgseKEGG
gseMKEGGgseMKEGG
idTypeidType
KEGG_path2extidKEGG_path2extid
merge_resultmerge_result
plotGOgraphplotGOgraph
plot-methodsplot method
plotting.clusterProfileplotting-clusterProfile
read.gmtread.gmt
search_kegg_organismsearch_kegg_organism
simplify-methodssimplify method
viewKEGGviewKEGG function is for visualize KEGG pathways works with...
Bioconductor-mirror/clusterProfiler documentation built on July 28, 2017, 5:21 a.m.