groupGO: Functional Profile of a gene set at specific GO level. Given...

Description Usage Arguments Value Author(s) See Also Examples

View source: R/groupGO.R

Description

Functional Profile of a gene set at specific GO level. Given a vector of genes, this function will return the GO profile at a specific level.

Usage

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groupGO(gene, OrgDb, keytype = "ENTREZID", ont = "CC", level = 2,
  readable = FALSE)

Arguments

gene

a vector of entrez gene id.

OrgDb

OrgDb

keytype

keytype of input gene

ont

One of "MF", "BP", and "CC" subontologies.

level

Specific GO Level.

readable

if readable is TRUE, the gene IDs will mapping to gene symbols.

Value

A groupGOResult instance.

Author(s)

Guangchuang Yu http://ygc.name

See Also

groupGOResult-class, compareCluster

Examples

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	data(gcSample)
	yy <- groupGO(gcSample[[1]], 'org.Hs.eg.db', ont="BP", level=2)
	head(summary(yy))
	#plot(yy)

Bioconductor-mirror/clusterProfiler documentation built on July 28, 2017, 5:21 a.m.