simplify-methods: simplify method

Description Usage Arguments Value Author(s) References

Description

simplify output from enrichGO by removing redundancy of enriched GO terms

simplify output from compareCluster by removing redundancy of enriched GO terms

Usage

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## S4 method for signature 'enrichResult'
simplify(x, cutoff = 0.7, by = "p.adjust",
  select_fun = min, measure = "Wang", semData = NULL)

## S4 method for signature 'compareClusterResult'
simplify(x, cutoff = 0.7, by = "p.adjust",
  select_fun = min, measure = "Wang", semData = NULL)

Arguments

x

output of enrichGO

cutoff

similarity cutoff

by

feature to select representative term, selected by 'select_fun' function

select_fun

function to select feature passed by 'by' parameter

measure

method to measure similarity

semData

GOSemSimDATA object

Value

updated enrichResult object

updated compareClusterResult object

Author(s)

Guangchuang Yu

Guangchuang Yu

References

issue #28 https://github.com/GuangchuangYu/clusterProfiler/issues/28


Bioconductor-mirror/clusterProfiler documentation built on July 28, 2017, 5:21 a.m.