Files in Bioconductor-mirror/cn.farms
cn.FARMS - factor analysis for copy number estimation

DESCRIPTION
NAMESPACE
R/callSummarize.R R/cnFarms.R R/combineData.R R/correctPkgname.R R/createAnnotation.R R/createMatrix.R R/determineBaselineArray.R R/distributionDistance.R R/dnaCopySf.R R/doCnFarms.R R/fragLengthCorr.R R/normAdd.R R/normalizeAverage.R R/normalizeCels.R R/normalizeNone.R R/normalizeNpData.R R/normalizeProbeSequence.R R/normalizeQuantiles.R R/normalizeSor.R R/plotDendrogram.R R/plotDensity.R R/plotEvalIc.R R/plotSmoothScatter.R R/plotViolines.R R/plotsRegions.R R/sFclusterFunctions.R R/sFinit.R R/sFsnowWrappers.R R/sFsnowfall-internal.R R/sFsocketRequest.R R/snowfallExt.R R/sparseFarmsC.R R/summarizationMl.R R/summarizationSl.R R/summarizeFarmsGaussian.R R/summarizeFarmsLaplaceExact.R R/summarizeFarmsLaplaceExact2.R R/summarizeFarmsLaplaceExact3.R R/summarizeFarmsLaplaceVar.R R/summarizeFarmsMethods.R R/summarizeStatistics.R
R/sysdata.rda
R/utils-lds.R R/vanillaIce.R R/windowFunctions.R R/windowMethods.R R/zzz.R
demo/00Index
demo/demo01Snp6.R demo/demo02Snp5.R demo/demo03Snp500k.R demo/demo04Snp250k.R demo/demo05Snp50k.R demo/demo99Testing.R
inst/CITATION
inst/exampleData/annotation/pd.genomewidesnp.6/1.1.0/featureSet.RData
inst/exampleData/mlData.RData
inst/exampleData/normData.RData
inst/exampleData/slData.RData
inst/exampleData/testSegments.RData
man/callSummarize.Rd man/cn.farms.Rd man/cnLibrary.Rd man/combineData.Rd man/createAnnotation.Rd man/createMatrix.Rd man/distributionDistance.Rd man/dnaCopySf.Rd man/doCnFarmsSingle.Rd man/flcSnp6Std.Rd man/flcStd.Rd man/fragLengCorr.Rd man/getFragmentSet.Rd man/getSingleProbeSetSize.Rd man/mlSummarization.Rd man/normAdd.Rd man/normalizeAverage.Rd man/normalizeCels.Rd man/normalizeNone.Rd man/normalizeNpData.Rd man/normalizeQuantiles.Rd man/normalizeSequenceEffect.Rd man/normalizeSor.Rd man/plotDendrogram.Rd man/plotDensity.Rd man/plotEvalIc.Rd man/plotRegions.Rd man/plotSmoothScatter.Rd man/plotViolines.Rd man/slSummarization.Rd man/sparseFarmsC.Rd man/summarizeFarmsExact.Rd man/summarizeFarmsExact2.Rd man/summarizeFarmsExact3.Rd man/summarizeFarmsGaussian.Rd man/summarizeFarmsMethods.Rd man/summarizeFarmsStatistics.Rd man/summarizeFarmsVariational.Rd man/summarizeWindowBps.Rd man/summarizeWindowMethods.Rd man/summarizeWindowStd.Rd
src/R_init_cnfarms.c
src/cn.farms.h
src/laplace.cpp
src/sepp_vect.h
src/sparse_farms.c
vignettes/bioinf-article.txi
vignettes/bioinf-bar.png
vignettes/bioinf.cls
vignettes/cn.farms.Rnw
vignettes/cnFarmsDefs.sty
vignettes/cnv.bib
vignettes/figures/figure1.pdf vignettes/figures/figure2.pdf
vignettes/natbib.bst
vignettes/natbib.sty
Bioconductor-mirror/cn.farms documentation built on June 1, 2017, 6:35 a.m.