normalizeSor: Runs the SOR normalization on microarray data

Description Usage Arguments Value Author(s)

View source: R/normalizeSor.R

Description

Runs the SOR normalization on microarray data

Usage

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normalizeSor(filenames, cores = 1, annotDir = NULL, alleles = FALSE,
  runtype = "ff", cyc = 5, pkgname = NULL, saveFile = "Sor")

Arguments

filenames

an absolute path of the CEL files

cores

cores

annotDir

annotDir

alleles

alleles

cyc

states the number of cycles for the EM algorithm.

runtype

Mode how the results are saved. Possible values are ff or bm. If ff is chosen the data will not be saved automatically. With bm the results will be saved permanently.

pkgname

Optional parameter for the CEL mapping.

saveFile

Name of the file to save.

Value

An instance of ExpressionSet

Author(s)

Djork-Arne Clevert [email protected] and Andreas Mitterecker [email protected]


Bioconductor-mirror/cn.farms documentation built on June 1, 2017, 6:35 a.m.