Analysis of co-knock-down RNAi data

BoxPlotShorth | Boxplot with horizontal bars at the midpoint of the shorth |

cellHTS2df | converts cellHTS objects to dataframes |

cortestmatrices | Function to extract correlations and corresponding p-values... |

data2graph | Function to create .dot files for graph representation of... |

df2array | function to do go from data frame to an array with values |

df2fitmatrix | matrix for lmFit from dataframe |

df2lmFit | lmFit from dataframe |

estmodel | Function to do estimate the main effects from data using... |

faultyscreen | faulty screen |

InteractGraph | functions to visualize interactions as a graph |

interactiontable | Returns a list of interactions with associated statistics. |

InteractLevelPlot | function to visualize interactions as a levelplot |

key | A key to data set screen1, contains (additional) information... |

MainFitPlot | Diagnostic plot |

PlotHeatmap | Plot a heatmap of interactions |

Pplot | Function to plot cumulative p-values |

repplots | reproducibility plots |

rlmmain | main effect estimation |

screen1_raw | screen1 raw data |

screen2_raw | screen2 raw data |

signalplots | plot variation vs signal intensity |

tt2matrix | Extracting data from a toptable and format it to matrix |

updateDf | updates dataframe after fitting of main estimates |

weightDf | Function to indicate which data points should be involved in... |

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