API for Bioconductor-mirror/compcodeR
RNAseq data simulation, differential expression analysis and performance comparison of differential expression methods

Global functions
DESeq.GLM.createRmd Man page Source code
DESeq.nbinom.createRmd Man page Source code
DESeq2.createRmd Man page Source code
DSS.createRmd Man page Source code
EBSeq.createRmd Man page Source code
NBPSeq.createRmd Man page Source code
NOISeq.prenorm.createRmd Man page Source code
SAMseq.createRmd Man page Source code
TCC.createRmd Man page Source code
baySeq.createRmd Man page Source code
checkClass Source code Source code
checkCompatibility Source code
checkDataObject Man page Source code
checkRange Source code
checkTableConsistency Man page Source code
check_compData Man page Source code
check_compData_results Man page Source code
compData Man page Source code
compData-class Man page
compcodeR Man page
compcodeR-package Man page
computeA Source code
computeAval Source code
computeCorrelation Source code
computeFDR Source code
computeFN Source code
computeFP Source code
computeM Source code
computeMCC Source code
computeMval Source code
computeOverlap Source code
computeSignal Source code
computeSorensen Source code
computeTN Source code
computeTP Source code
computeTPR Source code
computeTypeIerror Source code
convertListTocompData Man page Source code
convertcompDataToList Man page Source code
createResultTable Source code
createResultsRmdFile Source code
createSelectionPanel Source code
definePlotColors Source code
edgeR.GLM.createRmd Man page Source code
edgeR.exact.createRmd Man page Source code
findFileIdx Source code
findGenesAllZero Source code
generateCodeHTMLs Man page Source code
generateSyntheticData Man page Source code
listcreateRmd Man page Source code
logcpm.limma.createRmd Man page Source code
makeFalseDiscoveryCurves Source code
makeROCcurves Source code
padResultTable Source code
performComparison Source code
plotFDRVsExpr Source code
plotMASignificant Source code
plotResultTable Source code
plotScoreVsExpr Source code
plotScoreVsOutlierEvidence Source code
plotScoreVsOutliers Source code
plotSignalForZeroCounts Source code
runComparison Man page Source code
runComparisonGUI Man page Source code
runDiffExp Man page Source code
shorten.method.names Source code
show,compData-method Man page
sqrtcpm.limma.createRmd Man page Source code
summarizeSyntheticDataSet Man page Source code
ttest.createRmd Man page Source code
voom.limma.createRmd Man page Source code
voom.ttest.createRmd Man page Source code
vst.limma.createRmd Man page Source code
vst.ttest.createRmd Man page Source code
Bioconductor-mirror/compcodeR documentation built on June 1, 2017, 6:39 a.m.