Man pages for Bioconductor-mirror/compcodeR
RNAseq data simulation, differential expression analysis and performance comparison of differential expression methods

baySeq.createRmdGenerate a '.Rmd' file containing code to perform...
check_compDataCheck the validity of a 'compData' object
check_compData_resultsCheck the validity of a 'compData' result object
checkDataObjectCheck a list or a 'compData' object for compatibility with...
checkTableConsistencyCheck consistency of input table to 'runComparison'
compcodeR-packageRNAseq data simulation, differential expression analysis and...
compDataCreate a 'compData' object
compData-classClass compData
convertcompDataToListConvert a 'compData' object to a list
convertListTocompDataConvert a list with data and results to a 'compData' object
DESeq2.createRmdGenerate a '.Rmd' file containing code to perform...
DESeq.GLM.createRmdGenerate a '.Rmd' file containing code to perform...
DESeq.nbinom.createRmdGenerate a '.Rmd' file containing code to perform...
DSS.createRmdGenerate a '.Rmd' file containing code to perform...
EBSeq.createRmdGenerate a .Rmd file containing code to perform differential...
edgeR.exact.createRmdGenerate a '.Rmd' file containing code to perform...
edgeR.GLM.createRmdGenerate a '.Rmd' file containing code to perform...
generateCodeHTMLsGenerate HTML file(s) containing code used to run...
generateSyntheticDataGenerate synthetic count data sets
listcreateRmdList available *.createRmd functions
logcpm.limma.createRmdGenerate a '.Rmd' file containing code to perform...
NBPSeq.createRmdGenerate a '.Rmd' file containing code to perform...
NOISeq.prenorm.createRmdGenerate a '.Rmd' file containing code to perform...
runComparisonRun the performance comparison between differential...
runComparisonGUIA GUI to the main function for running the performance...
runDiffExpThe main function to run differential expression analysis
SAMseq.createRmdGenerate a '.Rmd' file containing code to perform...
show-compData-methodShow method for 'compData' object
sqrtcpm.limma.createRmdGenerate a '.Rmd' file containing code to perform...
summarizeSyntheticDataSetSummarize a synthetic data set by some diagnostic plots
TCC.createRmdGenerate a '.Rmd' file containing code to perform...
ttest.createRmdGenerate a '.Rmd' file containing code to perform...
voom.limma.createRmdGenerate a '.Rmd' file containing code to perform...
voom.ttest.createRmdGenerate a '.Rmd' file containing code to perform...
vst.limma.createRmdGenerate a '.Rmd' file containing code to perform...
vst.ttest.createRmdGenerate a '.Rmd' file containing code to perform...
Bioconductor-mirror/compcodeR documentation built on June 1, 2017, 6:39 a.m.