API for Bioconductor-mirror/copynumber
Segmentation of single- and multi-track copy number data by penalized least squares regression.

Global functions
BAF Man page
PottsCompact Source code
addArmlines Source code
addChromlines Source code
addToFreqPlot Source code
addToPlot Source code
adjustPos Source code
adjustSeg Source code
adjustSegPos Source code
aspcf Man page Source code
aspcfpart Source code
c.lines Source code
callAberrations Man page Source code
checkAndRetrievePlotInput Source code
checkChrom Source code
checkSampleID Source code
checkSegments Source code
checkWinsoutliers Source code
chromMax Source code
chromPattern Source code
chromosomeAberration Source code
chromosomeFreq Source code
chromosomeHeat Source code
circ Source code
colorSetup Source code
compact Source code
compactMulti Source code
connectSeg Source code
convert.unit Source code
doMultiPCF Source code
draw.roundEdge Source code
drawStalk Source code
exactPcf Source code
expandMulti Source code
fastAspcf Source code
filterMarkS4 Source code
findEst Source code
findMarks Source code
findMarksMulti Source code
findNN Source code
framedim Source code
genomeAberration Source code
genomeFreq Source code
genomeHeat Source code
get.seglim Source code
get.xticks Source code
get.yticks Source code
getArmandChromStop Source code
getArms Source code
getCol Source code
getCumBin Source code
getFilename Source code
getFreqData Source code
getFreqPlotParameters Source code
getGRangesFormat Man page Source code
getGlobPos Source code
getGlobal.xlim Source code
getHeatParameters Source code
getMad Source code
getPlotParameters Source code
getPlotSymbols Source code
getUnisegFormat Source code
getx Source code
handleMissing Source code
imp.constant Source code
imp.pcf Source code
imputeMissing Man page Source code
interpolate.pcf Man page Source code
is.multiseg Source code
logR Man page
lymphoma Man page
madWins Source code
markMultiPotts Source code
markWithPotts Source code
medianFilter Source code
micma Man page
multiPCFcompact Source code
multipcf Man page Source code
numericArms Source code
numericChrom Source code
pcf Man page Source code
pcfPlain Man page Source code
pcfWins Source code
plotAberration Man page Source code
plotAllele Man page Source code
plotChrom Man page Source code
plotCircle Man page Source code
plotFreq Man page Source code
plotGamma Man page Source code
plotGenome Man page Source code
plotHeatmap Man page Source code
plotIdeogram Source code
plotObs Source code
plotSample Man page Source code
plotSegments Source code
psi Source code
pullOutContent Source code
runFastMultiPCF Source code
runFastPcf Source code
runMultiPcfSubset Source code
runPcfSubset Source code
sawMarkM Source code
selectFastMultiPcf Source code
selectFastPcf Source code
selectSegments Man page Source code
separateChrom Source code
subset.abe Source code
subset.length Source code
subset.var Source code
subsetData Man page Source code
subsetSegments Man page Source code
updateFreqParameters Source code
updatePlotParameters Source code
winsorize Man page Source code
Bioconductor-mirror/copynumber documentation built on June 1, 2017, 6:41 a.m.