API for Bioconductor-mirror/cydar
Using Mass Cytometry for Differential Abundance Analyses

Global functions
CyData Man page Source code
CyData-class Man page
[,CyData,ANY,ANY,ANY-method Man page
[,CyData,ANY,ANY-method Man page
[,CyData,ANY-method Man page
[<-,CyData,ANY,ANY,CyData-method Man page
c,CyData-method Man page
cbind,CyData-method Man page
cellAssignments Man page
cellAssignments,CyData-method Man page
cellAssignments<- Man page
cellAssignments<-,CyData-method Man page
cellData Man page
cellData,CyData-method Man page
cellData<- Man page
cellData<-,CyData-method Man page
cellIntensities Man page
cellIntensities,CyData-method Man page
cellIntensities<- Man page
cellIntensities<-,CyData-method Man page
check_cell_data Source code
check_identical_refdata Source code
chosen_markers Source code
countCells Man page Source code
count_cells Source code
diffIntDistr Man page Source code
dnaGate Man page Source code
expandRadius Man page Source code
findFirstSphere Man page Source code
find_valid_markers Source code
find_vertex Source code
generateDensity Source code
get_LR_bounds Source code
get_used_intensities Source code
intensities Man page
intensities,CyData-method Man page
intensities<- Man page
intensities<-,CyData-method Man page
intensityRanges Man page Source code
interpretSpheres Man page Source code
labelSpheres Man page Source code
makeClosestTable Source code
makeHistograms Source code
makeHistoryTable Source code
makeLabPlot Source code
makeMetricTable Source code
makeNavPlot Source code
markerData Man page
markerData,CyData-method Man page
markerData<- Man page
markerData<-,CyData-method Man page
markernames Man page
markernames,CyData-method Man page
markernames<- Man page
markernames<-,CyData,ANY-method Man page
markernames<-,CyData-method Man page
medIntensities Man page Source code
multiIntHist Man page Source code
ncells Man page
ncells,CyData-method Man page
neighborDistances Man page Source code
nmarkers Man page
nmarkers,CyData-method Man page
normalizeBatch Man page Source code
obtainColours Source code
outlierGate Man page Source code
packIndices Man page Source code
pickBestMarkers Man page Source code
plotCellIntensity Man page Source code
plotCellLogFC Man page Source code
poolCells Man page Source code
prepareCellData Man page Source code
prepareDensity Source code
pull_out_data Source code
raw_cellAssignments Source code
raw_cellIntensities Source code
raw_intensities Source code
rbind,CyData-method Man page
recountCells Man page Source code
reorganize_cells Source code
sampleNames Man page
sampleNames,CyData-method Man page
sampleNames<- Man page
sampleNames<-,CyData,ANY-method Man page
sampleNames<-,CyData-method Man page
scat Source code
show,CyData-method Man page
spatialFDR Man page Source code
subset,CyData-method Man page
subsetToIndex Source code
transformDistr Source code
unpackIndices Man page Source code
Bioconductor-mirror/cydar documentation built on June 1, 2017, 6:48 a.m.