Man pages for Bioconductor-mirror/cydar
Using Mass Cytometry for Differential Abundance Analyses

countCellsCount cells in high-dimensional space
cyData-classCyData class and methods
cyData-getsetCyData getters and setters
cyData-subsetSubsetting and combining CyData
diffIntDistrCompute differences in intensity distributions
dnaGateGate events based on DNA channels
expandRadiusExpand the hypersphere radius
findFirstSphereIdentifies the first non-redundant hyperspheres
intensityRangesDefine intensity ranges
interpretSpheresInteractive interpretation of hyperspheres
labelSpheresLabel unannotated hyperspheres
medIntensitiesCompute median marker intensities
multiIntHistmultiIntHist
neighborDistancesCompute distances to neighbors
normalizeBatchNormalize intensities across batches
outlierGateCreate an outlier gate
packIndicesPack or unpack indices
pickBestMarkersPick best markers
plotCellsPlot cell or hypersphere data
poolCellsPool cells for pre-processing
prepareCellDataPrepare mass cytometry data
recountCellsRecount cells in each group
spatialFDRCompute the spatial FDR
Bioconductor-mirror/cydar documentation built on June 1, 2017, 6:48 a.m.