The dada2 package infers exact sequence variants (SVs) from amplicon data, replacing the coarser and less accurate OTU clustering approach. The dada2 pipeline takes as input demultiplexed fastq files, and outputs the sequence variants and their sample-wise abundances after removing substitution and chimera errors. Taxonomic classification is available via a native implementation of the RDP naive Bayesian classifier.
|Author||Benjamin Callahan <[email protected]>, Paul McMurdie, Susan Holmes|
|Bioconductor views||Classification Metagenomics Microbiome Sequencing|
|Maintainer||Benjamin Callahan <[email protected]>|
|Package repository||View on GitHub|
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