README.md

Build Status

dada2

Exact sample inference from Illumina amplicon data. Resolves real variants differing by as little as one nucleotide.

DADA2 Articles

DADA2: High resolution sample inference from Illumina amplicon data. Nature Methods, 2016. (Open Access link.)

Bioconductor workflow for microbiome data analysis: from raw reads to community analyses. F1000 Research, 2016.

Installation

The dada2 package binaries are available through Bioconductor:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("dada2")

In order to install dada2 from source (and get the latest and greatest new features) see our installation from source instructions.

Documentation

Our walkthrough of the DADA2 pipeline on paired end Illumina Miseq data.

The dada2 package manual.

Further documentation is available on the DADA2 front page.

Other Resources

Planned feature improvements are publicly catalogued at the main DADA2 development site on github; specifically on the "Issues" page for DADA2:

https://github.com/benjjneb/dada2/issues

If the feature you are hoping for is not listed, you are welcome to add it as a feature request "issue" on this page. This request will be publicly available and listed on the page.

Bugs and difficulties in using DADA2 are also welcome on the issue tracker.



Bioconductor-mirror/dada2 documentation built on June 1, 2017, 7:31 a.m.