qtables2: Internal tables function

Description Usage Arguments Value

View source: R/sequenceIO.R

Description

Internal function to replicate ShortRead::tables functionality while also returning average quals and a map from reads to uniques

Usage

1
qtables2(x, qeff = FALSE)

Arguments

x

ShortReadQ. The ShortReadQ-class object to table (or dereplicate).

qeff

logical(1). Calculate average quality by first transforming to expected error rate.

Value

List. Matches format of derep-class object.


Bioconductor-mirror/dada2 documentation built on June 1, 2017, 7:31 a.m.