Files in Bioconductor-mirror/ddgraph
Distinguish direct and indirect interactions with Graphical Modelling

.Rinstignore
DESCRIPTION
NAMESPACE
R/AllClassses.R R/AllGenerics.R R/calcDependence.R R/citest.R R/combinations.R R/dsep.R R/furlong.R R/methods-CITestResult.R R/methods-DDDataSet.R R/methods-DDGraph.R R/methods-DDGraphEdge.R R/misc.R R/ncpc.R R/other-algorithms.R R/plot-colour.R R/plot.R R/randomnet.R R/resampling.R R/svm.R
data/mesoBin.RData
data/mesoCont.RData
data/toyExample.RData
inst/NEWS
inst/extdata/supplementary_table_8_training_set.txt
inst/tests/gold_standard/meso_0.05.txt
inst/tests/gold_standard/meso_0.1.txt
inst/tests/gold_standard/meso_0.2.txt
inst/tests/gold_standard/meso_sm_0.05.txt
inst/tests/gold_standard/meso_sm_0.1.txt
inst/tests/gold_standard/meso_sm_0.2.txt
inst/tests/gold_standard/sm_0.05.txt
inst/tests/gold_standard/sm_0.1.txt
inst/tests/gold_standard/sm_0.2.txt
inst/tests/gold_standard/star-meso_0.05.txt
inst/tests/gold_standard/star-meso_0.1.txt
inst/tests/gold_standard/star-meso_0.2.txt
inst/tests/gold_standard/star-meso_sm_0.05.txt
inst/tests/gold_standard/star-meso_sm_0.1.txt
inst/tests/gold_standard/star-meso_sm_0.2.txt
inst/tests/gold_standard/star-sm_0.05.txt
inst/tests/gold_standard/star-sm_0.1.txt
inst/tests/gold_standard/star-sm_0.2.txt
inst/tests/gold_standard/star-vm_0.05.txt
inst/tests/gold_standard/star-vm_0.1.txt
inst/tests/gold_standard/star-vm_0.2.txt
inst/tests/gold_standard/star-vm_sm_0.05.txt
inst/tests/gold_standard/star-vm_sm_0.1.txt
inst/tests/gold_standard/star-vm_sm_0.2.txt
inst/tests/gold_standard/vm_0.05.txt
inst/tests/gold_standard/vm_0.1.txt
inst/tests/gold_standard/vm_0.2.txt
inst/tests/gold_standard/vm_sm_0.05.txt
inst/tests/gold_standard/vm_sm_0.1.txt
inst/tests/gold_standard/vm_sm_0.2.txt
inst/tests/reports/this_is_where_test_results_go.txt
inst/tests/test_DDDataSet.R inst/tests/test_FurlongDataSet.R inst/tests/test_NCPCRobustness.R inst/tests/test_functions.R inst/tests/test_lake.R man/CITestResult-dash-class.Rd man/CITestResultID.Rd man/CITestResultVar.Rd man/DDDataSet-dash-class.Rd man/DDGraph-dash-class.Rd man/DDGraphEdge-dash-class.Rd man/FurlongDataSet-dash-class.Rd man/NCPCRobustness-dash-class.Rd man/activePaths.Rd man/adjC-dot-allVarInx.Rd man/adjC-dot-allVarNames.Rd man/adjC-dot-condSetSize.Rd man/adjC-dot-targetInx.Rd man/adjC-dot-toIDs.Rd man/biased-dot-bn-dot-fit.Rd man/biased-dot-graph.Rd man/blockingNodes.Rd man/blockingVariables.Rd man/calcDependence.Rd man/calculateNCPCRobustnessStats.Rd man/chisq-dot-val.Rd man/ciTest-comma-DDDataSet-dash-method.Rd man/classLabels-comma-FurlongDataSet-dash-method.Rd man/color-dot-legend-dot-DDGraph.Rd man/combinationsTest.Rd man/convertPvalueToColorIndex.Rd man/convertToFactor.Rd man/customPlotPCAlgo.Rd man/dataType-comma-DDDataSet-dash-method.Rd man/datasetName-comma-DDDataSet-dash-method.Rd man/ddgraph-package.Rd man/entropyFromFreq.Rd man/estimateNetworkDistribution.Rd man/extract-dot-targetInx.Rd man/extractCITestResultProperty.Rd man/foldChangeFromFreq.Rd man/formulaFalseNeg.Rd man/graph-dot-to-dot-bn.Rd man/independent-dot-contributions-dot-formula-dot-mul.Rd man/independent-dot-contributions-dot-formula.Rd man/initialize-comma-DDDataSet-dash-method.Rd man/initialize-comma-DDGraph-dash-method.Rd man/is-dot-binary.Rd man/logseq.Rd man/loocv.Rd man/makeDDDataSet.Rd man/makeNCPCRobustness.Rd man/mapEnrichmentToColors.Rd man/mapEnrichmentToColorsDual.Rd man/mcMITest.Rd man/mcX2CLoop.Rd man/mcX2Test.Rd man/mcX2TestB50k.Rd man/mesoBin.Rd man/mesoCont.Rd man/myX2c.Rd man/names-comma-CITestResult-dash-method.Rd man/names-comma-DDDataSet-dash-method.Rd man/names-comma-DDGraph-dash-method.Rd man/names-comma-FurlongDataSet-dash-method.Rd man/ncpc.Rd man/ncpcResampling.Rd man/operators-dash-CITestResult.Rd man/operators-dash-DDDataSet.Rd man/operators-dash-DDGraph.Rd man/pValueAfterMultipleTesting.Rd man/pcalgMB.Rd man/pcalgNBR.Rd man/plot-comma-DDGraph-comma-missing-dash-method.Rd man/plotBNLearn.Rd man/plotPCalg.Rd man/plotSVMPerformance.Rd man/predSVM.Rd man/prob-dot-distr-dot-norm.Rd man/prob-dot-distr-dot-unif.Rd man/random-dot-bn-dot-fit.Rd man/rawData-comma-DDDataSet-dash-method.Rd man/readFurlongData.Rd man/recalculateSVMparams.Rd man/show-comma-CITestResult-dash-method.Rd man/show-comma-DDDataSet-dash-method.Rd man/show-comma-DDGraph-dash-method.Rd man/show-comma-DDGraphEdge-dash-method.Rd man/signalMatrix-comma-FurlongDataSet-dash-method.Rd man/svmFeatureSelectionLOOCV.Rd man/toDDDataSet-comma-FurlongDataSet-dash-method.Rd man/toyExample.Rd man/variableNames-comma-DDDataSet-dash-method.Rd
src/Makevars
src/Makevars.win
src/mcX2cloop.cpp
tests/test-all.R
vignettes/ddgraph.Rnw
vignettes/references.bib
Bioconductor-mirror/ddgraph documentation built on June 1, 2017, 7:32 a.m.