Files in Bioconductor-mirror/diffHic
Differential Analyis of Hi-C Data

DESCRIPTION
NAMESPACE
R/annotatePairs.R R/basefun.R R/boxPairs.R R/clusterPairs.R R/compartmentalize.R R/connectCounts.R R/consolidatePairs.R R/correctedContact.R R/cutGenome.R R/diClusters.R R/diffHicUsersGuide.R R/domainDirections.R R/enrichedPairs.R R/extractPatch.R R/filterPeaks.R R/filters.R R/getArea.R R/getPairData.R R/h5utils.R R/marginCounts.R R/mergePairs.R R/neighborCounts.R R/normalizeCNV.R R/pairParam.R R/plotPlaid.R R/prepPseudoPairs.R R/preparePairs.R R/prunePairs.R R/rotPlaid.R R/savePairs.R R/squareCounts.R R/totalCounts.R
inst/CITATION
inst/NEWS.Rd
inst/doc/bam2hdf.R inst/doc/diffHicUsersGuide.pdf
inst/doc/sra2bam.sh
inst/exdata/cuts.rds
inst/exdata/generator.R
inst/exdata/hic_sort.bam
inst/python/iter_map.py
inst/python/presplit_map.py
inst/tests/run_all_tests.sh
inst/tests/simcounts.R inst/tests/simsam.R inst/tests/test-anno.R
inst/tests/test-anno.Rout.save
inst/tests/test-box.R
inst/tests/test-box.Rout.save
inst/tests/test-cluster.R
inst/tests/test-cluster.Rout.save
inst/tests/test-connect.R
inst/tests/test-connect.Rout.save
inst/tests/test-cut.R
inst/tests/test-cut.Rout.save
inst/tests/test-diclust.R
inst/tests/test-diclust.Rout.save
inst/tests/test-dnase.R
inst/tests/test-dnase.Rout.save
inst/tests/test-domains.R
inst/tests/test-domains.Rout.save
inst/tests/test-empty.R
inst/tests/test-empty.Rout.save
inst/tests/test-filter.R
inst/tests/test-filter.Rout.save
inst/tests/test-hic-pair.R
inst/tests/test-hic-pair.Rout.save
inst/tests/test-interactions.R
inst/tests/test-interactions.Rout.save
inst/tests/test-itercor.R
inst/tests/test-itercor.Rout.save
inst/tests/test-margin.R
inst/tests/test-margin.Rout.save
inst/tests/test-neighbor.R
inst/tests/test-neighbor.Rout.save
inst/tests/test-pair-manip.R
inst/tests/test-pair-manip.Rout.save
inst/tests/test-patch.R
inst/tests/test-patch.Rout.save
inst/tests/test-prune.R
inst/tests/test-prune.Rout.save
man/DNaseHiC.Rd man/annotatePairs.Rd man/boxPairs.Rd man/clusterPairs.Rd man/compartmentalize.Rd man/connectCounts.Rd man/consolidatePairs.Rd man/correctedContact.Rd man/cutGenome.Rd man/diClusters.Rd man/diffHicUsersGuide.Rd man/domainDirections.Rd man/enrichedPairs.Rd man/extractPatch.Rd man/filterDiag.Rd man/filterPeaks.Rd man/filters.Rd man/getArea.Rd man/getPairData.Rd man/loadData.Rd man/marginCounts.Rd man/mergePairs.Rd man/neighborCounts.Rd man/normalizeCNV.Rd man/pairParam.Rd man/plotDI.Rd man/plotPlaid.Rd man/preparePairs.Rd man/prunePairs.Rd man/savePairs.Rd man/squareCounts.Rd man/totalCounts.Rd
src/Makevars
src/Makevars.win
src/binner.cpp
src/check_input.cpp
src/cluster_2d.cpp
src/count_background.cpp
src/count_connect.cpp
src/count_patch.cpp
src/diffhic.h
src/directionality.cpp
src/init.cpp
src/iterative_correction.cpp
src/neighbors.cpp
src/neighbors.h
src/pair_stats.cpp
src/quadrant_bg.cpp
src/read_count.h
src/report_hic_pairs.cpp
src/trended_filter.cpp
tests/test-basic.R
tests/test-basic.Rout.save
vignettes/diffHic.Rnw
Bioconductor-mirror/diffHic documentation built on July 4, 2017, 6:38 p.m.