API for Bioconductor-mirror/diffloop
Identifying differential DNA loops from chromatin topology data

Global functions
[,loops,missing,numeric,missing-method Man page
[,loops,numeric,missing,missing-method Man page
[,loops,numeric,numeric,missing-method Man page
addchr Man page
addchr,GRanges-method Man page
addchr,loops-method Man page
annotateAnchors Man page Source code
annotateAnchors,loops,GRanges,character,missing-method Man page
annotateAnchors,loops,GRanges,character,numeric-method Man page
annotateAnchors.bed Man page
annotateAnchors.bed,ANY-method Man page
annotateAnchors.bigwig Man page
annotateAnchors.bigwig,ANY-method Man page
annotateLoops Man page
annotateLoops,loops,GRanges,GRanges,GRanges-method Man page
annotateLoops,loops,missing,GRanges,GRanges-method Man page
annotateLoops.dge Man page
annotateLoops.dge,ANY-method Man page
bedToGRanges Man page
bedToGRanges,character-method Man page
binmaker Source code
calcLDSizeFactors Man page
calcLDSizeFactors,loops-method Man page
callCCDs Man page
callCCDs,ANY-method Man page
computeBoundaryScores Man page
computeBoundaryScores,loops-method Man page
diffloop Man page
diffloop-package Man page
dim,loops-method Man page
emptyloopsobject Source code
featureTest Man page
featureTest,loops,GRanges-method Man page
filterLoops Man page
filterLoops,ANY-method Man page
filterSpanningLoops Man page
filterSpanningLoops,loops,GRanges-method Man page
geneinfo Man page
getHumanGenes Man page
getHumanGenes,character-method Man page
getHumanGenes,missing-method Man page
getHumanGenesNoCache Source code
getHumanTSS Man page
getHumanTSS,character-method Man page
getHumanTSS,missing-method Man page
getMouseGenes Man page
getMouseGenes,character-method Man page
getMouseGenes,missing-method Man page
getMouseTSS Man page
getMouseTSS,character-method Man page
getMouseTSS,missing-method Man page
head,loops-method Man page
human.genes Man page
interchromosomal Man page
interchromosomal,loops-method Man page
intrachromosomal Man page
intrachromosomal,loops-method Man page
keepCTCFloops Man page
keepCTCFloops,loops,GRanges-method Man page
keepEPloops Man page
keepEPloops,loops,GRanges,GRanges-method Man page
loopAssoc Man page
loopAssoc,loops-method Man page
loopDistancePlot Man page
loopDistancePlot,loops-method Man page
loopGenes Man page
loopGenes,loops,GRanges-method Man page
loopGenes,loops,missing-method Man page
loopMetrics Man page
loopMetrics,loops-method Man page
loopPlot Man page Source code
loopPlot,loops,GRanges-method Man page
loopWidth Man page
loopWidth,loops-method Man page
loops Man page
loops-class Man page
loops.small Man page
loopsMake Man page Source code
loopsMake,ANY-method Man page
loopsMake.mango Man page Source code
loopsMake.mango,ANY-method Man page
loopsSubset Man page
loopsSubset,loops,loops-method Man page
makecombos Source code
mangoCorrection Man page
mangoCorrection,ANY-method Man page
manyLoopPlots Man page
manyLoopPlots,loops,GRanges-method Man page
mergeAnchors Man page Source code
mergeAnchors,loops,numeric,logical-method Man page
mergeAnchors,loops,numeric,missing-method Man page
model_chia Source code
numAnchors Man page
numAnchors,loops-method Man page
numLoops Man page Source code
numLoops,loops,missing-method Man page
numLoops,loops,numeric-method Man page
padGRanges Man page
padGRanges,GRanges-method Man page
pcaPlot Man page
pcaPlot,loops-method Man page
plotTopLoops Man page
plotTopLoops,loops-method Man page
quickAssoc Man page
quickAssoc,loops-method Man page
quickAssocVoom Man page
quickAssocVoom,loops-method Man page
removeRegion Man page
removeRegion,loops,GRanges-method Man page
removeSelfLoops Man page
removeSelfLoops,loops-method Man page
rmchr Man page
rmchr,GRanges-method Man page
rmchr,loops-method Man page
sampleNames,loops-method Man page
sampleNames<-,loops,ANY-method Man page
slidingWindowTest Man page
slidingWindowTest,loops,numeric,numeric-method Man page
splitSamples Man page
splitSamples,loops-method Man page
subsetLoops Man page Source code
subsetLoops,loops,logical-method Man page
subsetLoops,loops,numeric-method Man page
subsetRegion Man page
subsetRegion,loops,GRanges,missing-method Man page
subsetRegion,loops,GRanges,numeric-method Man page
subsetRegion1 Source code
subsetRegion2 Source code
subsetRegionAB Man page
subsetRegionAB,loops,GRanges,GRanges-method Man page
summary,loops-method Man page
tail,loops-method Man page
topLoops Man page Source code
topLoops,loops,missing,numeric-method Man page
topLoops,loops,numeric,missing-method Man page
topLoops,loops,numeric,numeric-method Man page
union,loops,loops-method Man page
updateLDGroups Man page
updateLDGroups,loops-method Man page
Bioconductor-mirror/diffloop documentation built on June 1, 2017, 7:35 a.m.