diffloop: diffloop: A package for differential DNA loop calling from...

Description diffloop classes


The diffloop package contains a suite of tools and S4 data objects to efficiently facilitate the analysis of ChIA-PET datasets. Key features include differential loop calling, visualization of looping in regions, quality-control metrics, and principal component analysis across experiments.

diffloop classes

Three classes mostly comprise the methodology in diffloop. First, loops is a basic structure that contains one or more ChIA-PET experiments, loopfit links an edgeR fit to a loops and currently has little functionality except for generating another loops object where per-loop summary statistics are added.

Bioconductor-mirror/diffloop documentation built on June 1, 2017, 7:35 a.m.