getMouseTSS: Get Mouse Transcription Start Sites

Description Usage Arguments Details Value Examples

Description

getMouseTSS returns a GRanges object of all transcription start sites for humans. Regions from mm9 for protein coding regions.

Usage

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getMouseTSS(chr)

## S4 method for signature 'missing'
getMouseTSS(chr)

## S4 method for signature 'character'
getMouseTSS(chr)

Arguments

chr

Specifies what chromosomes are desired for the TSS#

Details

This function returns a GRanges object with the coordinates and gene TSS. The start and end of the IRanges slot will be the same number, so consider using the padGRanges function after calling this function.

Value

A GRanges object

Examples

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# Grab all transition start sites genome-wide
mouse.TSS <- getMouseTSS()

Bioconductor-mirror/diffloop documentation built on June 1, 2017, 7:35 a.m.