loopGenes determines all gene bodies partially or fully contained
in a loop.
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A loops object
A GRanges object of genes in first mcol.
Function that annotates all loops. If there are multiple, the function returns a comma separated list. Adds a "loopGenes" column to the rowData slot. If the genesGR is left blank, diffloop will use protein coding genes for human from hg19.
A matrix of comma separated gene names
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