mergeAnchors combines anchors that are within a user-defined radius
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A loops object whose anchors will be merged
An integer value of the bp between anchors to be merged
A logical value to either retain (T) or remove (F) resulting self-loops after merging anchors
This function takes a loops object and combines nearby anchors, up to
a distance specified by the
mergegap. This likely will cause self
loops to form (loop where the left and right anchor are the same), which
can either be removed (by default) or retained with
A loops object
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# Merge anchors within 1kb of each other, keeping self loops rda<-paste(system.file('rda',package='diffloop'),'loops.small.rda',sep='/') load(rda) m1kb <- mergeAnchors(loops.small, 1000, FALSE) # Merge anchors within 1kb of each other, removing self loops by default m1kb_unique <- mergeAnchors(loops.small, 1000)
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