Bioconductor-mirror/doppelgangR: Identify likely duplicate samples from genomic or meta-data

The main function is doppelgangR(), which takes as minimal input a list of ExpressionSet object, and searches all list pairs for duplicated samples. The search is based on the genomic data (exprs(eset)), phenotype/clinical data (pData(eset)), and "smoking guns" - supposedly unique identifiers found in pData(eset).

Getting started

Package details

AuthorLevi Waldron, Markus Riester, Marcel Ramos
Bioconductor views GeneExpression Microarray QualityControl RNASeq
MaintainerLevi Waldron <[email protected]>
LicenseGPL (>=2.0)
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
Bioconductor-mirror/doppelgangR documentation built on June 1, 2017, 7:36 a.m.