cumulativeDuprateBarplot: Barplot showing the cumulative read counts fraction

Description Usage Arguments Details Value Examples

View source: R/cumulativeDuprateBarplot.R

Description

cumulativeDuprateBarplot Barplot showing the cumulative read counts fraction

Usage

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cumulativeDuprateBarplot(DupMat, stepSize = 0.05, ...)

Arguments

DupMat

The duplication matrix calculated by analyzeDuprates

stepSize

The size of the windows used for plotting

...

Other params sent to barplot

Details

This function makes a barplot showing the cumulative read counts fraction from the duplication matrix calculated by analyzeDuprates.

Value

nothing

Examples

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# dm is a duplication matrix calculated by analyzeDuprates:
# R> dm <- analyzeDuprates(bamDuprm,gtf,stranded,paired,threads)
attach(dupRadar_examples)

# call the plot
cumulativeDuprateBarplot(DupMat=dm)

Bioconductor-mirror/dupRadar documentation built on June 1, 2017, 7:37 a.m.