duprateExpBoxplot: Duplication rate ~ total reads per kilobase (RPK) boxplot

Description Usage Arguments Details Value Examples

View source: R/duprateExpBoxplot.R

Description

duprateExpBoxplot Duplication rate ~ total reads per kilobase (RPK) boxplot

Usage

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duprateExpBoxplot(DupMat, stepSize = 0.05, ...)

Arguments

DupMat

The duplication matrix calculated by analyzeDuprates

stepSize

Expression bin seze for the boxplot

...

Other params sent to boxplot

Details

This function makes a boxplot showing the distribution of per gene duplication rate versus the reads per kilobase (RPK) inside gene expression bins.

Value

nothing

Examples

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# dm is a duplication matrix calculated by analyzeDuprates:
# R> dm <- analyzeDuprates(bamDuprm,gtf,stranded,paired,threads)
attach(dupRadar_examples)

# duprate boxplot
duprateExpBoxplot(DupMat=dm)

Bioconductor-mirror/dupRadar documentation built on June 1, 2017, 7:37 a.m.