duprateExpFit: Duplication rate ~ total read count fit model

Description Usage Arguments Details Value Examples

View source: R/duprateExpFit.R

Description

duprateExpDensPlot Duplication rate ~ total read count fit model

Usage

1
duprateExpFit(DupMat)

Arguments

DupMat

The duplication matrix calculated by analyzeDuprates

Details

Fit a Generalized Linear Model using a logit function between thegene duplication rate and the total read count.

Value

The GLM and the coefficients of the fitted logit function

Examples

1
2
3
4
5
6
# dm is a duplication matrix calculated by analyzeDuprates:
# R> dm <- analyzeDuprates(bamDuprm,gtf,stranded,paired,threads)
attach(dupRadar_examples)

# duprate plot
duprateExpFit(DupMat=dm)

Bioconductor-mirror/dupRadar documentation built on June 1, 2017, 7:37 a.m.