duprateExpIdentify: Identify genes plotted by 'duprateExpPlot'

Description Usage Arguments Details Value Examples

View source: R/duprateExpIdentify.R

Description

duprateExpIdentify Identify genes plotted by duprateExpPlot

Usage

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duprateExpIdentify(DupMat, idCol = "ID")

Arguments

DupMat

The duplication matrix calculated by analyzeDuprates

idCol

The column from the duplication matrix containing the labels

Details

This function makes a barplot showing the cumulative read counts fraction from the duplication matrix calculated by analyzeDuprates.

Value

The identified points. x and y values match the ones from duprateExpPlot

Examples

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# dm is a duplication matrix calculated by analyzeDuprates:
# R> dm <- analyzeDuprates(bamDuprm,gtf,stranded,paired,threads)
attach(dupRadar_examples)

# call the plot and identify genes
duprateExpPlot(DupMat=dm)
duprateExpIdentify(DupMat=dm)

Bioconductor-mirror/dupRadar documentation built on June 1, 2017, 7:37 a.m.