getDynamicRange: Dynamic range

Description Usage Arguments Details Value Examples

View source: R/getDynamicRange.R

Description

getDynamicRange Calculate the dynamic range of the RNAseq experiment

Usage

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Arguments

dm

The duplication matrix calculated by analyzeDuprates

Details

This function calculates the dynamic range of the RNAseq eperiment

Value

A list with 2 elements, containing the dynamic range counting all reads and the dynamic range after removing duplicates.

Examples

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# dm is a duplication matrix calculated by analyzeDuprates:
# R> dm <- analyzeDuprates(bamDuprm,gtf,stranded,paired,threads)
attach(dupRadar_examples)

# calculate the dynamic range
getDynamicRange(dm)

Bioconductor-mirror/dupRadar documentation built on June 1, 2017, 7:37 a.m.