readcountExpBoxplot: Barplot of percentage of reads falling into expression bins

Description Usage Arguments Details Value Examples

View source: R/readcountExpBoxplot.R

Description

readcountExpBoxplot Barplot of percentage of reads falling into expression bins

Usage

1
readcountExpBoxplot(DupMat, stepSize = 0.05, ...)

Arguments

DupMat

The duplication matrix calculated by analyzeDuprates

stepSize

The number of bars to be shown

...

Other parameters sent to barplot()

Details

This function makes a barplot of percentage of reads falling into expression bins

Value

nothing Other parameters sent to barplot()

Examples

1
2
3
4
5
6
7
# dm is a duplication matrix calculated by analyzeDuprates:
# R> dm <- analyzeDuprates(bamDuprm,gtf,stranded,paired,threads)
attach(dupRadar_examples)


# barplot of percentage of reads falling into expression bins
readcountExpBoxplot(DupMat=dm)

Bioconductor-mirror/dupRadar documentation built on June 1, 2017, 7:37 a.m.