API for Bioconductor-mirror/eisa
Expression data analysis via the Iterative Signature Algorithm

Global functions
ALLModules Man page
ALLModulesSmall Man page
CHRListHyperGParams Man page
CHRListHyperGParams-class Man page
CHRListHyperGResult Man page
CHRListHyperGResult-class Man page
GOListHyperGParams Man page
GOListHyperGParams-class Man page
GOListHyperGResult Man page
GOListHyperGResult-class Man page
GeneralListHyperGParams Man page
GeneralListHyperGParams-class Man page
GeneralListHyperGResult Man page
GeneralListHyperGResult-class Man page
ISA Man page Source code
ISA2heatmap Man page Source code
ISACHR Man page Source code
ISAEnrichment Man page Source code
ISAExpressionSet Man page
ISAExpressionSet-class Man page
ISAFilterRobust Man page Source code
ISAGO Man page Source code
ISAHTML Man page Source code
ISAHTMLModules Man page Source code
ISAHTMLTable Man page Source code
ISAIterate Man page Source code
ISAKEGG Man page Source code
ISAModules Man page
ISAModules-class Man page
ISAModules.to.isa.result Source code
ISANormalize Man page Source code
ISARobustness Man page Source code
ISASweep Man page Source code
ISASweepGraph Man page Source code
ISASweepGraphPlot Man page Source code
ISAUnique Man page Source code
ISAmiRNA Man page Source code
ISAmnplot Man page Source code
KEGGListHyperGParams Man page
KEGGListHyperGParams-class Man page
KEGGListHyperGResult Man page
KEGGListHyperGResult-class Man page
ListHyperGParams Man page
ListHyperGParams-class Man page
ListHyperGResult Man page
ListHyperGResult-class Man page
[,ISAModules,ANY,ANY,ANY-method Man page
[,ISAModules,ANY,ANY-method Man page
[,ISAModules,ANY-method Man page
[[,ISAModules,ANY,ANY-method Man page
[[,ISAModules,ANY-method Man page
annotate Man page Source code
annotation,ISAModules-method Man page
anrichment Man page
class:ISAModules Man page
coerce,Biclust,ISAModules-method Man page
coerce,ISAModules,Biclust-method Man page
condGeneIdUniverse,CHRListHyperGResult-method Man page
condGeneIdUniverse,GOListHyperGResult-method Man page
condGeneIdUniverse,GeneralListHyperGResult-method Man page
condGeneIdUniverse,KEGGListHyperGResult-method Man page
condGeneIdUniverse,ListHyperGResult-method Man page
condGeneIdUniverse,miRNAListHyperGResult-method Man page
condPlot Man page Source code
conditional,GOListHyperGParams-method Man page
conditional,GOListHyperGResult-method Man page
conditional<-,GOListHyperGParams,logical-method Man page
convert.miRNA Source code
dim,ISAModules-method Man page
drive Man page
drive,CHRListHyperGParams-method Man page
drive,GOListHyperGParams-method Man page
drive,GeneralListHyperGParams-method Man page
drive,KEGGListHyperGParams-method Man page
drive,ListHyperGParams-method Man page
drive,miRNAListHyperGParams-method Man page
drive<- Man page
drive<-,CHRListHyperGParams,logical-method Man page
drive<-,GOListHyperGParams,logical-method Man page
drive<-,GeneralListHyperGParams,logical-method Man page
drive<-,KEGGListHyperGParams,logical-method Man page
drive<-,ListHyperGParams,logical-method Man page
drive<-,miRNAListHyperGParams,logical-method Man page
eisa.get.nm Source code
expPlot Man page Source code
expPlotColbar Man page Source code
expPlotCreate Man page Source code
expectedCounts,CHRListHyperGResult-method Man page
expectedCounts,GOListHyperGResult-method Man page
expectedCounts,GeneralListHyperGResult-method Man page
expectedCounts,KEGGListHyperGResult-method Man page
expectedCounts,ListHyperGResult-method Man page
expectedCounts,miRNAListHyperGResult-method Man page
featExprs Man page
featExprs,ISAExpressionSet-method Man page
featureNames,ISAModules-method Man page
featureThreshold Man page
featureThreshold,ISAModules-method Man page
fix.xtable Source code
geneCounts,CHRListHyperGResult-method Man page
geneCounts,GOListHyperGResult-method Man page
geneCounts,GeneralListHyperGResult-method Man page
geneCounts,KEGGListHyperGResult-method Man page
geneCounts,ListHyperGResult-method Man page
geneCounts,miRNAListHyperGResult-method Man page
geneIdUniverse,CHRListHyperGResult-method Man page
geneIdUniverse,GOListHyperGResult-method Man page
geneIdUniverse,GeneralListHyperGResult-method Man page
geneIdUniverse,KEGGListHyperGResult-method Man page
geneIdUniverse,ListHyperGResult-method Man page
geneIdUniverse,miRNAListHyperGResult-method Man page
geneIdsByCategory,CHRListHyperGResult-method Man page
geneIdsByCategory,GOListHyperGResult-method Man page
geneIdsByCategory,GeneralListHyperGResult-method Man page
geneIdsByCategory,KEGGListHyperGResult-method Man page
geneIdsByCategory,ListHyperGResult-method Man page
geneIdsByCategory,miRNAListHyperGResult-method Man page
geneMappedCount,CHRListHyperGResult-method Man page
geneMappedCount,GOListHyperGResult-method Man page
geneMappedCount,GeneralListHyperGResult-method Man page
geneMappedCount,KEGGListHyperGResult-method Man page
geneMappedCount,ListHyperGResult-method Man page
geneMappedCount,miRNAListHyperGResult-method Man page
getFeatureMatrix Man page
getFeatureMatrix,ISAModules-method Man page
getFeatureNames Man page
getFeatureNames,ISAModules-method Man page
getFeatureScores Man page
getFeatureScores,ISAModules-method Man page
getFeatures Man page
getFeatures,ISAModules-method Man page
getFullFeatureMatrix Man page
getFullFeatureMatrix,ISAModules-method Man page
getFullSampleMatrix Man page
getFullSampleMatrix,ISAModules-method Man page
getNoFeatures Man page
getNoFeatures,ISAModules-method Man page
getNoSamples Man page
getNoSamples,ISAModules-method Man page
getOrganism Man page
getOrganism,ISAModules-method Man page
getSampleMatrix Man page
getSampleMatrix,ISAModules-method Man page
getSampleNames Man page
getSampleNames,ISAModules-method Man page
getSampleScores Man page
getSampleScores,ISAModules-method Man page
getSamples Man page
getSamples,ISAModules-method Man page
gograph Man page Source code
gographPlot Man page Source code
hasNA Man page
hasNA,ISAExpressionSet-method Man page
hasNA<- Man page
hasNA<-,ISAExpressionSet-method Man page
html.df Source code
htmlReport,CHRListHyperGResult-method Man page
htmlReport,GOListHyperGResult-method Man page
htmlReport,GeneralListHyperGResult-method Man page
htmlReport,KEGGListHyperGResult-method Man page
htmlReport,ListHyperGResult-method Man page
htmlReport,miRNAListHyperGResult-method Man page
hyperGTest,CHRListHyperGParams-method Man page
hyperGTest,GOListHyperGParams-method Man page
hyperGTest,GeneralListHyperGParams-method Man page
hyperGTest,KEGGListHyperGParams-method Man page
hyperGTest,ListHyperGParams-method Man page
hyperGTest,miRNAListHyperGParams-method Man page
isa.ListHyperGTest Source code
isa.autogen.create.dirs Source code
isa.autogen.module Source code
isa.result.to.ISAModules Source code
length,ISAModules-method Man page
makeValidParams,CHRListHyperGParams-method Man page
makeValidParams,GOListHyperGParams-method Man page
makeValidParams,GeneralListHyperGParams-method Man page
makeValidParams,KEGGListHyperGParams-method Man page
makeValidParams,ListHyperGParams-method Man page
makeValidParams,miRNAListHyperGParams-method Man page
miRNAListHyperGParams Man page
miRNAListHyperGParams-class Man page
miRNAListHyperGResult Man page
miRNAListHyperGResult-class Man page
mnplot Man page Source code
oddsRatios,CHRListHyperGResult-method Man page
oddsRatios,GOListHyperGResult-method Man page
oddsRatios,GeneralListHyperGResult-method Man page
oddsRatios,KEGGListHyperGResult-method Man page
oddsRatios,ListHyperGResult-method Man page
oddsRatios,miRNAListHyperGResult-method Man page
onLoad Source code
onUnload Source code
ontology,GOListHyperGParams-method Man page
ontology,GOListHyperGResult-method Man page
ontology<-,GOListHyperGParams,character-method Man page
overlap Man page Source code
overlapPlot Man page Source code
pData,ISAModules-method Man page
prenormalized Man page
prenormalized,ISAExpressionSet-method Man page
prenormalized<- Man page
prenormalized<-,ISAExpressionSet-method Man page
print.ISAexpPlot Man page Source code
profilePlot Man page Source code
pvalues,CHRListHyperGResult-method Man page
pvalues,GOListHyperGResult-method Man page
pvalues,GeneralListHyperGResult-method Man page
pvalues,KEGGListHyperGResult-method Man page
pvalues,ListHyperGResult-method Man page
pvalues,miRNAListHyperGResult-method Man page
runData Man page
runData,ISAModules-method Man page
sampExprs Man page
sampExprs,ISAExpressionSet-method Man page
sampleNames,ISAModules-method Man page
sampleThreshold Man page
sampleThreshold,ISAModules-method Man page
seedData Man page
seedData,ISAModules-method Man page
select.eset Source code
sigCategories,CHRListHyperGResult-method Man page
sigCategories,GOListHyperGResult-method Man page
sigCategories,GeneralListHyperGResult-method Man page
sigCategories,KEGGListHyperGResult-method Man page
sigCategories,ListHyperGResult-method Man page
sigCategories,miRNAListHyperGResult-method Man page
summary,CHRListHyperGResult-method Man page
summary,GOListHyperGResult-method Man page
summary,GeneralListHyperGResult-method Man page
summary,KEGGListHyperGResult-method Man page
summary,ListHyperGResult-method Man page
summary,miRNAListHyperGResult-method Man page
universeCounts,CHRListHyperGResult-method Man page
universeCounts,GOListHyperGResult-method Man page
universeCounts,GeneralListHyperGResult-method Man page
universeCounts,KEGGListHyperGResult-method Man page
universeCounts,ListHyperGResult-method Man page
universeCounts,miRNAListHyperGResult-method Man page
universeMappedCount,CHRListHyperGResult-method Man page
universeMappedCount,GOListHyperGResult-method Man page
universeMappedCount,GeneralListHyperGResult-method Man page
universeMappedCount,KEGGListHyperGResult-method Man page
universeMappedCount,ListHyperGResult-method Man page
universeMappedCount,miRNAListHyperGResult-method Man page
Bioconductor-mirror/eisa documentation built on June 1, 2017, 7:40 a.m.