Bioconductor-mirror/exomeCopy: Copy number variant detection from exome sequencing read depth

Detection of copy number variants (CNV) from exome sequencing samples, including unpaired samples. The package implements a hidden Markov model which uses positional covariates, such as background read depth and GC-content, to simultaneously normalize and segment the samples into regions of constant copy count.

Getting started

Package details

AuthorMichael Love
Bioconductor views CopyNumberVariation Genetics Sequencing
MaintainerMichael Love <[email protected]>
LicenseGPL (>= 2)
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
Bioconductor-mirror/exomeCopy documentation built on June 1, 2017, 8:33 a.m.