Files in Bioconductor-mirror/exomePeak
exome-based anlaysis of MeRIP-Seq data: peak calling and differential analysis

DESCRIPTION
NAMESPACE
NEWS
R/RMT.R R/bed2transcriptdb.R R/bltest.r R/ctest.R R/diff.consistency.evaluate.R R/divide.anno.into.batches.R R/exomepeak.R R/exomepeak_notification.R R/get.bam.chrs.R R/get.bam.read.length.R R/get.block.from.rna.peak.R R/get.check.points.R R/get.check.points.reads.count.R R/get.gene.anno.R R/get.peak.from.loci.R R/get.peak.reads.count.R R/get.reads.count.R R/get.sample.id.R R/get.table.peak.result.R R/merge.and.compare.two.different.conditions.R R/peak.calling.module.R R/read.gtf.R R/remove.local.anomalities.R R/report.diff.peak.based.on.result.R R/report.peak.based.on.result.R R/rhtest.R
build/vignette.rds
inst/CITATION
inst/extdata/IP1.bam
inst/extdata/IP1.bam.bai
inst/extdata/IP2.bam
inst/extdata/IP2.bam.bai
inst/extdata/IP3.bam
inst/extdata/IP3.bam.bai
inst/extdata/IP4.bam
inst/extdata/IP4.bam.bai
inst/extdata/Input1.bam
inst/extdata/Input1.bam.bai
inst/extdata/Input2.bam
inst/extdata/Input2.bam.bai
inst/extdata/Input3.bam
inst/extdata/Input3.bam.bai
inst/extdata/example.gtf
inst/extdata/treated_IP1.bam
inst/extdata/treated_IP1.bam.bai
inst/extdata/treated_Input1.bam
inst/extdata/treated_Input1.bam.bai
man/RMT.Rd man/bltest.Rd man/ctest.Rd man/exomePeak-package.Rd man/exomepeak.Rd man/rhtest.Rd
vignettes/exomePeak-Overview.Rnw
vignettes/exomePeak_output/con_peak.bed
vignettes/exomePeak_output/con_peak.xls
vignettes/exomePeak_output/con_sig_diff_peak.bed
vignettes/exomePeak_output/con_sig_diff_peak.xls
vignettes/exomePeak_output/diff_peak.bed
vignettes/exomePeak_output/diff_peak.xls
vignettes/exomePeak_output/exomePeak.Rdata
vignettes/exomePeak_output/peak.bed
vignettes/exomePeak_output/peak.xls
vignettes/exomePeak_output/sig_diff_peak.bed
vignettes/exomePeak_output/sig_diff_peak.xls
Bioconductor-mirror/exomePeak documentation built on June 1, 2017, 8:33 a.m.