get.npci.data: return a fCI object given the gene expression data

Description Usage Arguments Details Value Note Author(s) References See Also Examples

View source: R/precomputefCI.R

Description

return a fCI object given the gene expression data

Usage

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get.npci.data(sample.data.normalized, wt.index, df.index)

Arguments

sample.data.normalized
wt.index
df.index

Details

TBD

Value

expression ratio

a dataframe of fCI gene expression ratios (folds) defined by control-control index and control-case index

Note

TBD

Author(s)

Shaojun Tang

References

http://software.steenlab.org/fCI/

See Also

TBD

Examples

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  sample.data.normalized=data.frame(matrix(sample(3:100, 100*4, replace=TRUE),
    100,4))
  wt.index=c(1,2)
  df.index=c(1,3)
  get.npci.data(sample.data.normalized, wt.index, df.index)

Bioconductor-mirror/fCI documentation built on June 1, 2017, 8:34 a.m.