Man pages for Bioconductor-mirror/flowCore
flowCore: Basic structures for flow cytometry data

actionItem-classClass "actionItem"
arcsinhTransformCreate the definition of an arcsinh transformation function...
asinht-classClass "asinht"
asinhtGml2-classClass asinhtGml2
biexponentialTransformCompute a transform using the 'biexponential' function
boundaryFilter-classClass "boundaryFilter"
characterOrTransformation-classClass "characterOrTransformation"
checkOffsetFix the offset when its values recorded in header and TEXT...
coerceConvert an object to another class
compensateActionItem-classClass "compensateActionItem"
compensatedParameter-classClass "compensatedParameter"
compensateView-classClass "compensateView"
compensation-classClass "compensation"
concreteFilter-classClass "concreteFilter"
dg1polynomial-classClass "dg1polynomial"
each_col-methodsMethod to apply functions over flowFrame margins
EHtrans-classClass "EHtrans"
ellipsoidGateClass "ellipsoidGate"
estimateMedianLogicleEstimates a common logicle transformation for a flowSet.
exponential-classClass "exponential"
expressionFilter-classClass "expressionFilter"
fcReference-classClass "fcReference" and its subclasses
FCSTransTransformComputes a transform using the 'iplogicle' function
filter-and-methodsTake the intersection of two filters
filter-classA class for representing filtering operations to be applied...
filterDetails-methodsObtain details about a filter operation
filter-in-methodsFilter-specific membership methods
filterList-classClass "filterList"
filter-methodsFilter FCS files
filter-on-methodsMethods for Function %on% in Package 'flowCore'
filterReference-classClass filterReference
filterResult-classClass "filterResult"
filterResultList-classClass "filterResultList"
filters-classClass "filters" and "filtersList"
filterSet-classClass filterSet(deprecated)
filterSummary-classClass "filterSummary"
filterSummaryList-classClass "filterSummaryList"
flowCore-packageProvides S4 data structures and basic infrastructure and...
flowFrame-class'flowFrame': a class for storing observed quantitative...
flowSet-class'flowSet': a class for storing flow cytometry raw data from...
fsApplyApply a Function over values in a flowSet
gateActionItem-classClass "gateActionItem"
gateView-classClass "gateView"
getChannelMarkerget channel and marker information from a 'flowFrame' that...
getIndexSort-methodsExtract Index Sorted Data from an FCS File
GvHDExtract of a Graft versus Host Disease monitoring experiment...
hyperlog-classClass "hyperlog"
hyperlogtGml2-classClass hyperlogtGml2
identifier-methodsRetrieve the GUID of flowCore objects
inverseLogicleTransformComputes the inverse of the transform defined by the...
invsplitscale-classClass "invsplitscale"
keyword-methodsMethods to retrieve keywords of a flowFrame
kmeansFilterClass "kmeansFilter"
linearTransformCreate the definition of a linear transformation function to...
lintGml2-classClass lintGml2
lnTransformCreate the definition of a ln transformation function...
logarithm-classClass "logarithm"
logicalFilterResult-classClass "logicalFilterResult"
logicletGml2-classClass logicletGml2
logicleTransformComputes a transform using the 'logicle_transform' function
logtGml2-classClass logtGml2
logTransformCreate the definition of a log transformation function (base...
manyFilterResult-classClass "manyFilterResult"
markernamesget or update the marker names
multipleFilterResult-classClass "multipleFilterResult"
norm2Filter-classClass "norm2Filter"
normalization-classClass "normalization"
normalizeActionItem-classClass "normalizeActionItem"
normalizeView-classClass "normalizeView"
parameterFilter-classClass "parameterFilter"
parameters-classClass "parameters"
parameters-methodsObtain information about parameters for flow cytometry...
parameterTransform-classClass "parameterTransform"
polygonGateClass "polygonGate"
polytopeGateDefine filter boundaries
quadGateClass "quadGate"
quadratic-classClass "quadratic"
quadraticTransformCreate the definition of a quadratic transformation function...
randomFilterResult-classClass "randomFilterResult"
ratio-classClass "ratio"
ratiotGml2-classClass "ratiotGml2"
read.FCSRead an FCS file
read.FCSheaderRead the TEXT section of a FCS file
read.flowSetRead a set of FCS files
rectangleGateClass "rectangleGate"
sampleFilter-classClass "sampleFilter"
scaleTransformCreate the definition of a scale transformation function to...
setOperationFilter-classClass "setOperationFilter"
singleParameterTransform-classClass "singleParameterTransform"
sinht-classClass "sinht"
spillover-flowSetCompute a spillover matrix from a flowSet
split-methodsMethods to split flowFrames and flowSets according to filters
splitscale-classClass "splitscale"
splitScaleTransformCompute the split-scale transformation describe by FL. Battye
squareroot-classClass "squareroot"
Subset-methodsSubset a flowFrame or a flowSet
subsettingActionItem-classClass "subsettingActionItem"
subsetting-classClass "subsetting"
subsettingView-classClass "subsettingView"
summarizeFilter-methodsMethods for function summarizeFilter
timeFilter-classClass "timeFilter"
transformActionItem-classClass "transformActionItem"
transformation-classClass "transformation"
transform-class'transform': a class for transforming flow-cytometry data by...
transformFilter-classA class for encapsulating a filter to be performed on...
transformList-classClass "transformList"
transformMap-classA class for mapping transforms between parameters
transformReference-classClass "transformReference"
transformView-classClass "transformView"
truncateTransformCreate the definition of a truncate transformation function...
unitytransform-classClass "unitytransform"
validFiltersCheck if all filters in a filters matches same paramters
view-classClass "view"
workFlow-classClass "workFlow"(deprecated)
write.FCSWrite an FCS file
write.flowSetWrite an FCS file
Bioconductor-mirror/flowCore documentation built on July 7, 2017, 11:55 p.m.