Man pages for Bioconductor-mirror/gQTLstats
gQTLstats: computationally efficient analysis for eQTL and allied studies

cisAssoctest for variant-expression associations in cis or generally,...
clipPCstransformations of expression data in smlSet instances
directPlotvisualize relationship between empirical and modeled FDR...
enumerateByFDRfilter a ciseStore instance using an FDR threshold
eqBox2visualization of expression or other assay measure against...
FDRsupp-classClass '"FDRsupp"'
filtFDRillustration of FDRsupp class
gQTLsuse SummarizedExperiment to manage a collection of gQTL...
gQTLstats-packagegQTLstats: computationally efficient analysis for eQTL and...
hmm878labeled GRanges with ChromHMM chromatin states for GM12878
manhWngrmanhattan plot with named GRanges
mixedVCFtoSnpMatrixamalgamate called genotypes and imputed allelic dosages in...
pifdrutility for computing plug-in FDR
qqStorecreate a binned QQplot for a sharded store
queryVCFobtain SnpMatrix from VCF genotypes
senstabcreate a plottable table for eQTL sensitivity analysis...
setFDRfuncestimate and store function relating association scores to...
storeToStatsextract a vector from store results as ff (out of memory...
tqbrowsergeneral browsing facility for trans-gQTL
transAssoccompute 'trans' SNP-feature associations by wrapping AllAssoc
transBrowseshiny app to exhibit genotype:genomic feature distributions
TransStoreInstance constructor for managing trans gQTL results
TransStore-classClass '"TransStore"'
tsByRankharvest contents of a TransStore by rank in associations of...
txsPlotvisualize transformed FDR against transformed association...
Bioconductor-mirror/gQTLstats documentation built on June 1, 2017, 9:36 a.m.