GAIA: An R package for genomic analysis of significant chromosomal aberrations.

crc | Real aCGH Dataset of Colorectal Cancer (CRC) |

crc_markers | Markers Descriptors for Real aCGH Dataset of Colorectal... |

gaia-package | GAIA: An R package for genomic analysis of significant... |

generate_approx_null_hypothesis | This function computes the probability distribution of the... |

generate_null_hypothesis | This function computes the probability distribution of the... |

load_cnv | This function create the object containing all needed... |

load_markers | This function create the marker descriptor object containing... |

peel_off | The iterative peel-off procedure to extract the independent... |

qvalue | The procedure to compute the q-value. |

runGAIA | Run GAIA algorithm. |

search_peaks_in_regions | This function extracts the primary peak within a... |

synthCNV_Matrix | Example of aberration descriptor data matrix |

synthMarkers_Matrix | Example of marker descriptor data matrix |

write_significant_regions | This function writes into a tab delimited file the... |

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