Bioconductor-mirror/geecc: Gene Set Enrichment Analysis Extended to Contingency Cubes

Use log-linear models to perform hypergeometric and chi-squared tests for gene set enrichments for two (based on contingency tables) or three categories (contingency cubes). Categories can be differentially expressed genes, GO terms, sequence length, GC content, chromosomal position, phylostrata, divergence-strata, ....

Getting started

Package details

AuthorMarkus Boenn
Bioconductor views BiologicalQuestion GO GeneExpression GeneSetEnrichment Microarray RNASeq StatisticalMethod Transcription WorkflowStep
MaintainerMarkus Boenn <[email protected]>
LicenseGPL (>= 2)
Version1.11.0
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
install.packages("devtools")
library(devtools)
install_github("Bioconductor-mirror/geecc")
Bioconductor-mirror/geecc documentation built on June 1, 2017, 9:39 a.m.