genefilter: methods for filtering genes from high-throughput experiments

Anova | A filter function for Analysis of Variance |

coxfilter | A filter function for univariate Cox regression. |

cv | A filter function for the coefficient of variation. |

dist2 | Calculate an n-by-n matrix by applying a function to all... |

eSetFilter | A function to filter an eSet object |

filtered_p | Compute and adjust p-values, with filtering |

filterfun | Creates a first FALSE exiting function from the list of... |

filter_volcano | Volcano plot for overall variance filtering |

findLargest | Find the Entrez Gene ID corresponding to the largest... |

gapFilter | A filter to select genes based on there being a gap. |

genefilter | A function to filter genes. |

genefinder | Finds genes that have similar patterns of expression. |

genescale | Scales a matrix or vector. |

half.range.mode | Mode estimation for continuous data |

kappa_p | Compute proportionality constant for fold change bound. |

kOverA | A filter function for k elements larger than A. |

maxA | A filter function to filter according to the maximum. |

nsFilter | Filtering of Features in an ExpressionSet |

pOverA | A filter function to filter according to the proportion of... |

rejection_plot | Plot rejections vs. p-value cutoff |

rowFtests | t-tests and F-tests for rows or columns of a matrix |

rowpAUCs | Rowwise ROC and pAUC computation |

rowROC-class | Class "rowROC" |

rowSds | Row variance and standard deviation of a numeric array |

shorth | A location estimator based on the shorth |

tdata | A small test dataset of Affymetrix Expression data. |

ttest | A filter function for a t.test |

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