Bioconductor-mirror/geneplast: Evolutionary and plasticity analysis based on orthologous groups distribution

Geneplast is designed for evolutionary and plasticity analysis based on orthologous groups distribution in a given species tree. It uses Shannon information theory and orthologs abundance to estimate the Evolutionary Plasticity Index. Additionally, it implements the Bridge algorithm to determine the evolutionary root of a given gene based on its orthologs distribution.

Getting started

Package details

AuthorRodrigo Dalmolin, Mauro Castro
Bioconductor views GeneRegulation Genetics SystemsBiology
MaintainerMauro Castro <[email protected]>
LicenseGPL (>= 2)
Version1.3.0
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
install.packages("devtools")
library(devtools)
install_github("Bioconductor-mirror/geneplast")
Bioconductor-mirror/geneplast documentation built on June 1, 2017, 9:41 a.m.