API for Bioconductor-mirror/genomeIntervals
Operations on genomic intervals

Global functions
$,Genome_intervals-method Man page
$<-,Genome_intervals-method Man page
.readGff3 Man page
GenomeIntervals Man page
GenomeIntervals-constructor Man page
Genome_intervals deprecated functions Man page
Genome_intervals-class Man page
Genome_intervals-ordering Man page
Genome_intervals_stranded-class Man page
[,Genome_intervals,ANY-method Man page
[,Genome_intervals-method Man page
[<-,Genome_intervals,ANY,missing,Genome_intervals-method Man page
[[,Genome_intervals,ANY,ANY-method Man page
[[,Genome_intervals,ANY-method Man page
[[,Genome_intervals-method Man page
[[<-,Genome_intervals,ANY,ANY-method Man page
[[<-,Genome_intervals,ANY-method Man page
[[<-,Genome_intervals-method Man page
annotation Man page
annotation,Genome_intervals-method Man page
annotation<- Man page
annotation<-,Genome_intervals-method Man page
as Man page
as,Genome_intervals,GRangesList-method Man page
as,Genome_intervals,RangedData-method Man page
as,Genome_intervals-method Man page
c Man page
c,Genome_intervals-method Man page
c,Genome_intervals_stranded-method Man page
coerce,Genome_intervals,GRanges-method Man page
coerce,Genome_intervals,GRangesList-method Man page
coerce,Genome_intervals,Intervals_full-method Man page
coerce,Genome_intervals,RangedData-method Man page
coerce,Genome_intervals,character-method Man page
coerce,Genome_intervals,data.frame-method Man page
coerce,Genome_intervals_stranded,character-method Man page
commonCombination Source code
core_annotated Man page
core_annotated,Genome_intervals-method Man page
core_annotated,Genome_intervals_stranded-method Man page
distance_to_nearest Man page
distance_to_nearest,Genome_intervals,Genome_intervals-method Man page
distance_to_nearest,Genome_intervals_stranded,Genome_intervals_s Man page
extract Source code
gen_ints Man page
genomeIntervals Man page
genomeIntervals coercion methods Man page
genomeIntervals-package Man page
getGffAttribute Man page Source code
i Man page
inter_base Man page
inter_base,Genome_intervals-method Man page
inter_base<- Man page
inter_base<-,Genome_intervals-method Man page
interval_complement Man page
interval_complement,Genome_intervals-method Man page
interval_complement,Genome_intervals_stranded-method Man page
interval_intersection Man page
interval_intersection,Genome_intervals-method Man page
interval_intersection,Genome_intervals_stranded-method Man page
interval_overlap Man page
interval_overlap,ANY,missing-method Man page
interval_overlap,Genome_intervals,Genome_intervals-method Man page
interval_overlap,Genome_intervals_stranded,Genome_intervals_stra Man page
interval_overlap,missing,ANY-method Man page
interval_union Man page
interval_union,Genome_intervals-method Man page
interval_union,Genome_intervals_stranded-method Man page
intervalsForDistance Source code
intervalsForOverlap Source code
j Man page
k Man page
order Man page
order,Genome_intervals-method Man page
order,Genome_intervals_stranded-method Man page
parseGffAttributes Man page Source code
rank Man page
rank,Genome_intervals-method Man page
rank,Genome_intervals_stranded-method Man page
readBasePairFeaturesGff3 Man page
readBasePairFeaturesGff3,character-method Man page
readGff3 Man page Source code
readGff3,character-method Man page
readZeroLengthFeaturesGff3 Man page
readZeroLengthFeaturesGff3,character-method Man page
seq_name Man page
seq_name,Genome_intervals-method Man page
seq_name<- Man page
seq_name<-,Genome_intervals-method Man page
seqnames,Genome_intervals-method Man page
seqnames<-,Genome_intervals-method Man page
show,Genome_intervals-method Man page
size,Genome_intervals-method Man page
sort Man page
sort,Genome_intervals-method Man page
sort,Genome_intervals_stranded-method Man page
strand Man page
strand,Genome_intervals_stranded-method Man page
strand<- Man page
strand<-,Genome_intervals_stranded,ANY-method Man page
strand<-,Genome_intervals_stranded-method Man page
type<-,Genome_intervals-method Man page
which_nearest,Genome_intervals,Genome_intervals-method Man page
width,Genome_intervals-method Man page
writeGff3 Man page
writeGff3,Genome_intervals-method Man page
writeGff3,data.frame-method Man page
xtfrm Man page
xtfrm,Genome_intervals-method Man page
xtfrm,Genome_intervals_stranded-method Man page
Bioconductor-mirror/genomeIntervals documentation built on June 1, 2017, 9:42 a.m.