Bioconductor-mirror/genoset: A RangedSummarizedExperiment with methods for copy number analysis

GenoSet provides an extension of the RangedSummarizedExperiment class with additional API features. This class provides convenient and fast methods for working with segmented genomic data. Additionally, GenoSet provides the class RleDataFrame which stores runs of data along the genome for multiple samples and provides very fast summaries of arbitrary row sets (regions of the genome).

Getting started

Package details

AuthorPeter M. Haverty
Bioconductor views CopyNumberVariation DataRepresentation Infrastructure Microarray SNP
MaintainerPeter M. Haverty <[email protected]>
LicenseArtistic-2.0
Version1.33.1
URL https://github.com/phaverty/genoset
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
install.packages("devtools")
library(devtools)
install_github("Bioconductor-mirror/genoset")
Bioconductor-mirror/genoset documentation built on July 1, 2017, 7:36 a.m.