API for Bioconductor-mirror/ggbio
Visualization tools for genomic data

Global functions
$,GGbio-method Man page
$<-,GGbio-method Man page
+,Bioplot,Any-method Man page
+,GGbio,ANY-method Man page
+,Ideogram,ANY-method Man page
Arith Man page
Arith,Tracks,ANY-method Man page
Cache Source code
GGbio Man page Source code
GGbio-class Man page
Grob Man page
Grob,GGbio-method Man page
Grob,gg-method Man page
Grob,gtable-method Man page
Grob,lattice-method Man page
Grob,trellis-method Man page
Grob-class Man page
Grob-method Man page
GrobList Man page Source code
GrobList-class Man page
Ideogram Man page Source code
Ideogram-class Man page
Plot Man page
Plot,GGbio-method Man page
Plot,Ideogram-method Man page
Plot,gg-method Man page
Plot,trellis-method Man page
Plot-class Man page
PlotList Source code
ScalePlot Source code
ScalePlot2 Source code
Tracked Man page Source code
Tracked-class Man page
Tracks-class Man page
[,PlotList,numeric,missing,ANY-method Man page
[,Tracks,numeric,missing,ANY-method Man page
aggregate Source code
align.plots Man page
alignPlots Man page Source code
append_unit Source code
argList Source code
arrangeGrobByParsingLegend Man page Source code
autoplot Man page
autoplot,BSgenome-method Man page
autoplot,BamFile-method Man page
autoplot,BamFileList-method Man page
autoplot,ExpressionSet-method Man page
autoplot,GAlignments-method Man page
autoplot,GRanges-method Man page
autoplot,GRangesList-method Man page
autoplot,IRanges-method Man page
autoplot,OrganismDb-method Man page
autoplot,RangedSummarizedExperiment-method Man page
autoplot,Rle-method Man page
autoplot,RleList-method Man page
autoplot,Seqinfo-method Man page
autoplot,TabixFile-method Man page
autoplot,TxDbOREnsDb-method Man page
autoplot,VCF-method Man page
autoplot,VRanges-method Man page
autoplot,Views-method Man page
autoplot,character-method Man page
autoplot,matrix-method Man page
backup Man page
backup,Tracks-method Man page
bgColor Man page
bgColor,GGbio-method Man page
bgColor,Tracked-method Man page
bgColor,gg-method Man page
bgColor,gtable-method Man page
bgColor<- Man page
bgColor<-,GGbio,character-method Man page
bgColor<-,Tracked,character-method Man page
bgColor<-,gg,character-method Man page
bgColor<-,gtable,character-method Man page
breakGr Source code
breakGrTo5polyDf Source code
buildFacetsFromArgs Source code
c,PlotList-method Man page
c,Tracks-method Man page
cbind,Tracks-method Man page
changeStrandColor Source code
chrDefault Source code
circle Man page Source code
coerce,Tracks,grob-method Man page
colorizeArgs Source code
combineAes Source code
combineAes2 Source code
combineNames Source code
copyAttr Source code
do.ggcall Source code
evalLan Source code
filterArgs Source code
findGrobs Source code
fixed,GGbio-method Man page
fixed,Tracked-method Man page
fixed,gg-method Man page
fixed<-,GGbio,logical-method Man page
fixed<-,Tracked,logical-method Man page
fixed<-,gg,logical-method Man page
genPlots Source code
geom_alignment Man page
geom_alignment,BamFile-method Man page
geom_alignment,GRanges-method Man page
geom_alignment,GRangesList-method Man page
geom_alignment,OrganismDb-method Man page
geom_alignment,TxDbOREnsDb-method Man page
geom_alignment,missing-method Man page
geom_alignment,uneval-method Man page
geom_arch Man page
geom_arch,GRanges-method Man page
geom_arch,data.frame-method Man page
geom_arch,missing-method Man page
geom_arch,uneval-method Man page
geom_arch_flip Source code
geom_arch_flip2 Source code
geom_arrow Man page
geom_arrow,GRanges-method Man page
geom_arrow,missing-method Man page
geom_arrow,uneval-method Man page
geom_arrowrect Man page
geom_arrowrect,GRanges-method Man page
geom_arrowrect,missing-method Man page
geom_arrowrect,uneval-method Man page
geom_bar Man page
geom_bar,ANY-method Man page
geom_bar,GRanges-method Man page
geom_bar,chevron-method Man page
geom_bar,missing-method Man page
geom_chevron Man page
geom_chevron,GRanges-method Man page
geom_chevron,missing-method Man page
geom_chevron,uneval-method Man page
geom_rect Man page
geom_rect,ANY-method Man page
geom_rect,GRanges-method Man page
geom_rect,missing-method Man page
geom_rect,uneval-method Man page
geom_segment Man page
geom_segment,ANY-method Man page
geom_segment,GRanges-method Man page
geom_segment,missing-method Man page
geom_segment,uneval-method Man page
getArrowLen Source code
getAxisHeight Source code
getDrawFunFromGeomStat Source code
getGeomFun Source code
getGrFromXlim Source code
getHeight Source code
getLegendGrob Source code
getLimits Source code
getLimitsFromLayer Source code
getLimitsFromScales Source code
getNR Source code
getPanelIndex Source code
getStatFun Source code
get_digits Source code
ggbio Man page
ggbio-class Man page
ggbioPlot-class Man page
ggbio_ggplot Source code
ggbio_ggplot_mold Source code
ggpcp Source code
ggplot.BSgenome Man page
ggplot.ExpressionSet Man page
ggplot.GAlignments Man page
ggplot.RsamtoolsFile Man page
ggplot.Seqinfo Man page
ggplot.SummarizedExperiment Man page Source code
ggplot.TxDbOREnsDb Man page
ggplot.VCF Man page
ggplot.Vector Man page
ggplot.character Man page
ggplot.matrix Man page
ggplotGrob-class Man page
ggplotPlot-class Man page
ggsave Man page Source code
hasAxis Man page
hasAxis,GGbio-method}\alias{hasAxis,GGbio-method Man page
hasAxis,Tracked-method Man page Man page
hasAxis,gg-method Man page Man page
hasAxis<- Man page
hasAxis<-,GGbio,logical-method Man page
hasAxis<-,Tracked,logical-method Man page
hasAxis<-,gg,logical-method Man page
height Man page
height,GGbio-method Man page
height,Tracked-method Man page
height,gg-method Man page
height<- Man page
height<-,GGbio,numericORunit-method Man page
height<-,Tracked,numericORunit-method Man page
height<-,gg,numericORunit-method Man page
isStat Source code
isSupportedPlots Source code
labeled Man page
labeled,GGbio-method Man page
labeled,Ideogram-method Man page
labeled,Tracked-method Man page
labeled,gTree-method Man page
labeled,gg-method Man page
labeled,gtable-method Man page
labeled,text-method Man page
labeled<- Man page
labeled<-,GGbio,logical-method Man page
labeled<-,Ideogram,logical-method Man page
labeled<-,Tracked,logical-method Man page
labeled<-,gg,logical-method Man page
labeled<-,gtable,logical-method Man page
latticeGrob-class Man page
latticePlot-class Man page
layout_circle Man page
layout_circle,GRanges-method Man page
layout_circle,missing-method Man page
layout_circle,uneval-method Man page
layout_karyogram Man page
layout_karyogram,GRanges-method Man page
listOfGrobs Source code
mapToGG Source code
mutable Man page
mutable,GGbio-method Man page
mutable,Tracked-method Man page
mutable,gg-method Man page
mutable<- Man page
mutable<-,GGbio,logical-method Man page
mutable<-,Tracked,logical-method Man page
mutable<-,gg,logical-method Man page
needCache Source code
need_color Source code
nextView Man page Source code
onAttach Source code
parseHeight Source code
plotFragLength Man page
plotFragLength,character,GRanges-method Man page
plotGrandLinear Man page Source code
plotIdeogram Man page Source code
plotInter Source code
plotInter2 Source code
plotKaryogram Man page
plotList Source code
plotRangesLinkedToData Man page
plotRangesLinkedToData,GenomicRanges_OR_GRangesList-method Man page
plotRangesLinkedToData,RangedSummarizedExperiment-method Man page
plotSpliceSum Man page
plotSpliceSum,character,EnsDb-method Man page
plotSpliceSum,character,GRangesList-method Man page
plotSpliceSum,character,TxDb-method Man page
plotStackedOverview Man page Source code
prevView Man page Source code
print Man page
print,Tracks-method Man page
print.Tracks Source code
radius Source code
rbind,Tracks-method Man page
reduceListOfPlots Source code
removeXAxis Source code
removeYAxis Source code
replaceArg Source code
rescale Man page
rescale,gg-method Man page
rescale,ggplot-method Man page
rescale,numeric-method Man page
reset Man page
reset,Tracks-method Man page
returnProto Source code
scaleGrob Source code
scale_by_xlim Source code
scale_fill_fold_change Man page Source code
scale_fill_giemsa Man page Source code
scale_x_sequnit Man page Source code
setStat Source code
show Man page
show,Tracks-method Man page
spaceAroundPanel Source code
stat_aggregate Man page
stat_aggregate,GRanges-method Man page
stat_aggregate,missing-method Man page
stat_aggregate,uneval-method Man page
stat_bin Man page
stat_bin,ANY-method Man page
stat_bin,Rle-method Man page
stat_bin,RleList-method Man page
stat_bin,missing-method Man page
stat_bin,uneval-method Man page
stat_coverage Man page
stat_coverage,BamFile-method Man page
stat_coverage,GRanges-method Man page
stat_coverage,GRangesList-method Man page
stat_coverage,missing-method Man page
stat_coverage,uneval-method Man page
stat_gene Man page
stat_gene,TxDb-method Man page
stat_identity Man page
stat_identity,ANY-method Man page
stat_identity,GRanges-method Man page
stat_identity,Rle-method Man page
stat_identity,RleList-method Man page
stat_identity,missing-method Man page
stat_identity,uneval-method Man page
stat_mismatch Man page
stat_mismatch,BamFile-method Man page
stat_mismatch,GRanges-method Man page
stat_mismatch,missing-method Man page
stat_mismatch,uneval-method Man page
stat_reduce Man page
stat_reduce,GRanges-method Man page
stat_reduce,IRanges-method Man page
stat_reduce,TxDbOREnsDb-method Man page
stat_reduce,missing-method Man page
stat_reduce,uneval-method Man page
stat_slice Man page
stat_slice,Rle-method Man page
stat_slice,RleList-method Man page
stat_slice,missing-method Man page
stat_slice,uneval-method Man page
stat_stepping Man page
stat_stepping,GRanges-method Man page
stat_stepping,missing-method Man page
stat_stepping,uneval-method Man page
stat_table Man page
stat_table,GRanges-method Man page
stat_table,GRangesList-method Man page
stat_table,missing-method Man page
stat_table,uneval-method Man page
sub_names Source code
summary Man page
summary,Tracks-method Man page
textPlot Source code
theme_alignment Man page Source code
theme_clear Man page Source code
theme_genome Man page Source code
theme_noexpand Man page Source code
theme_null Man page Source code
theme_onlyXaxis Source code
theme_pack_panels Man page Source code
theme_tracks_fancy Source code
theme_tracks_sunset Man page Source code
titleGrob Source code
trackWidth Source code
tracks Man page Source code
trans_seq Source code
trans_seq_format Source code
trans_seq_rev Source code
transformTextToSpace Source code
uniformAroundPanel Source code
validList Source code
xlim Man page
xlim,GRanges-method Man page
xlim,IRanges-method Man page
xlim,Tracks-method Man page
xlim,numeric-method Man page
xlim<- Man page
xlim<-,Tracks,GRanges-method Man page
xlim<-,Tracks,IRanges-method Man page
xlim<-,Tracks,numeric-method Man page
xlim_car Source code
zoom Man page Source code Source code
zoomLevelToGeom Source code
zoom_in Man page Source code
zoom_out Man page Source code
Bioconductor-mirror/ggbio documentation built on July 1, 2017, 7:37 a.m.