Files in Bioconductor-mirror/ggtree
an R package for visualization and annotation of phylogenetic trees with their covariates and other associated data

.Rbuildignore
.gitignore
CONTRIBUTING.md CONTRIBUTORS.md
DESCRIPTION
Makefile
NAMESPACE
NEWS
R/AllClasses.R R/AllGenerics.R R/Date.R R/MRCA.R R/NJ.R R/RAxML.R R/ape.R R/as.polytomy.R R/clade-functions.R R/codeml.R R/codeml_mlc.R R/experimental_function.R R/facet_plot.R R/geom_balance.R R/geom_cladelabel.R R/geom_hilight.R R/geom_label.R R/geom_point.R R/geom_range.R R/geom_segment.R R/geom_strip.R R/geom_taxalink.R R/geom_text.R R/geom_tiplab.R R/geom_tree.R R/geom_treescale.R R/ggtree-package.R R/ggtree.R R/gheatmap.R R/hyphy.R R/inset.R R/jplace.R R/layout.R R/method-drop-tip.R R/method-fortify.R R/method-get-tree.R R/method-groupClade.R R/method-groupOTU.R R/method-gzoom.R R/method-identify.R R/method-print.R R/method-reroot.R R/method-scale-color.R R/method-show.R R/msaplot.R R/multiplot.R R/operator.R R/paml.R R/paml_rst.R R/phangorn.R R/phylip.R R/phylopic.R R/plot.R R/r8s.R R/rescale_tree.R R/subview.R R/theme.R R/tidytree.R R/treeio.R R/utilities.R R/xlim.R R/zzz.R README.Rmd README.md
inst/CITATION
inst/as.phylo.igraph.R
inst/examples/FluA_H3_AA.fas
inst/examples/Genotype.txt
inst/examples/MCC_FluA_H3.tree
inst/examples/NAG_inHA1.txt
inst/examples/mlc
inst/examples/rst
inst/examples/sites.txt
man/Date2decimal.Rd man/GetSubtree.df.Rd man/GetSubtreeUnrooted.Rd man/MRCA.Rd man/NJ.Rd man/add-TREEDATA.Rd man/add_TREEINFO.Rd man/add_colorbar.Rd man/annotation_image.Rd man/apeBoot.Rd man/applyLayoutDaylight.Rd man/as.binary.Rd man/as.data.frame.phylo.Rd man/as.polytomy.Rd man/collapse.Rd man/decimal2Date.Rd man/dotFun.Rd man/download.phylopic.Rd man/expand.Rd man/facet_plot.Rd man/flip.Rd man/fortify.Rd man/geom_aline.Rd man/geom_balance.Rd man/geom_cladelabel.Rd man/geom_hilight.Rd man/geom_label2.Rd man/geom_nodepoint.Rd man/geom_point2.Rd man/geom_range.Rd man/geom_rootpoint.Rd man/geom_segment2.Rd man/geom_strip.Rd man/geom_taxalink.Rd man/geom_text2.Rd man/geom_tiplab.Rd man/geom_tiplab2.Rd man/geom_tippoint.Rd man/geom_tree.Rd man/geom_tree2.Rd man/geom_treescale.Rd man/get.offspring.tip.Rd man/get.path.Rd man/get.phylopic.Rd man/getChild.df.Rd man/getNodeAngle.df.Rd man/getNodesBreadthFirst.df.Rd man/getParent.df.Rd man/getSubtree.Rd man/getSubtreeUnrooted.df.Rd man/getTreeArcAngles.Rd man/get_balance_position.Rd man/get_clade_position.Rd man/get_heatmap_column_position.Rd man/get_taxa_name.Rd man/ggtree-ggproto.Rd man/ggtree.Rd man/gheatmap.Rd man/groupClade-methods.Rd man/groupOTU-methods.Rd man/gzoom-methods.Rd man/gzoom.phylo.Rd man/identify.Rd man/inset.Rd man/layoutDaylight.Rd man/layoutEqualAngle.Rd man/msaplot.Rd man/multiplot.Rd man/nodebar.Rd man/nodeid.Rd man/nodepie.Rd man/open_tree.Rd man/phylopic.Rd man/pipe.Rd man/print.beastList.Rd man/reroot-methods.Rd man/rescale_tree.Rd man/revts.Rd man/rm.singleton.newick.Rd man/rotate.Rd man/rotateTreePoints.df.Rd man/rotate_tree.Rd man/scaleClade.Rd man/scale_color-methods.Rd man/scale_x_ggtree.Rd man/stat_balance.Rd man/stat_hilight.Rd man/subview.Rd man/theme_inset.Rd man/theme_transparent.Rd man/theme_tree.Rd man/theme_tree2.Rd man/update-TREE.Rd man/viewClade.Rd man/xlim_expand.Rd man/xlim_tree.Rd tests/testthat.R tests/testthat/test-conversion.R tests/testthat/test-geom_balance.R tests/testthat/test-geom_cladelabel.R tests/testthat/test-group.R tests/testthat/test-xlim_expand.R tests/testthat/testthat.R vignettes/advanceTreeAnnotation.Rmd
vignettes/figures/fan_layout.gif
vignettes/figures/ggtree_objects.png
vignettes/figures/ggtree_objects_v2.png
vignettes/figures/inset_img.png
vignettes/figures/phangorn_example.png
vignettes/figures/phylobase_example.png
vignettes/figures/phylopic1.png
vignettes/figures/phylopic2.png
vignettes/figures/rotate_clade.gif
vignettes/figures/rotate_tree.gif
vignettes/figures/subview_animation.gif
vignettes/ggtree.Rmd
vignettes/ggtree.bib
vignettes/ggtreeUtilities.Rmd
vignettes/nature.csl
vignettes/toc.css
vignettes/treeAnnotation.Rmd vignettes/treeImport.Rmd vignettes/treeManipulation.Rmd vignettes/treeVisualization.Rmd
Bioconductor-mirror/ggtree documentation built on July 19, 2017, 8:44 a.m.