Man pages for Bioconductor-mirror/ggtree
an R package for visualization and annotation of phylogenetic trees with their covariates and other associated data

add_colorbaradd_colorbar
add-TREEDATA%<+%
add_TREEINFO%+>%
annotation_imageannotation_image
apeBootapeBoot
applyLayoutDaylightapplyLayoutDaylight
as.binaryas.binary
as.data.frame.phyloas.data.frame
as.polytomyas.polytomy
collapsecollapse
Date2decimalDate2decimal
decimal2Datedecimal2Date
dotFun.
download.phylopicdownload.phylopic
expandexpand
facet_plotfacet_plot
flipflip
fortifyfortify
geom_alinegeom_aline
geom_balancegeom_balance
geom_cladelabelgeom_cladelabel
geom_hilightgeom_hilight
geom_label2geom_label2
geom_nodepointgeom_nodepoint
geom_point2geom_point2
geom_rangegeom_range
geom_rootpointgeom_rootpoint
geom_segment2geom_segment2
geom_stripgeom_strip
geom_taxalinkgeom_taxalink
geom_text2geom_text2
geom_tiplabgeom_tiplab
geom_tiplab2geom_tiplab2
geom_tippointgeom_tippoint
geom_treegeom_tree
geom_tree2geom_tree2
geom_treescalegeom_treescale
get_balance_positionget_balance_position
getChild.dfgetChild.df
get_clade_positionget_clade_position
get_heatmap_column_positionget_heatmap_column_position
getNodeAngle.dfgetNodeAngle.df
getNodesBreadthFirst.dfgetNodesBreadthFirst.df
get.offspring.tipget.offspring.tip
getParent.dfgetParent.df
get.pathget.path
get.phylopicget.phylopic
getSubtreegetSubtree
GetSubtree.dfGetSubtree.df
GetSubtreeUnrootedGetSubtreeUnrooted
getSubtreeUnrooted.dfGetSubtreeUnrooted
get_taxa_nameget_taxa_name
getTreeArcAnglesgetTreeArcAngles
ggtreevisualizing phylogenetic tree and heterogenous associated...
ggtree-ggprotoStatBalance
gheatmapgheatmap
groupClade-methodsgroupClade method
groupOTU-methodsgroupOTU method
gzoom-methodsgzoom method
gzoom.phylogzoom
identifyidentify
insetinset
layoutDaylightEqual daylight layout method for unrooted trees.
layoutEqualAnglelayoutEqualAngle
MRCAMRCA
msaplotmsaplot
multiplotmultiplot
NJNJ
nodebarnodebar
nodeidnodeid
nodepienodepie
open_treeopen_tree
phylopicphylopic
pipepipe
print.beastListprint
reroot-methodsreroot method
rescale_treerescale_tree
revtsrevts
rm.singleton.newickrm.singleton.newick
rotaterotate
rotate_treerotate_tree
rotateTreePoints.dfrotateTreePoints.data.fram
scaleCladescaleClade
scale_color-methodsscale_color method
scale_x_ggtreescale_x_ggtree
stat_balancestat_balance
stat_hilightstat_hilight
subviewsubview
theme_insettheme_inset
theme_transparenttheme_transparent
theme_treetheme_tree
theme_tree2theme_tree2
update-TREE%<%
viewCladeviewClade
xlim_expandxlim_expand
xlim_treexlim_tree
Bioconductor-mirror/ggtree documentation built on July 19, 2017, 8:44 a.m.