Bioconductor-mirror/gmapR: An R interface to the GMAP/GSNAP/GSTRUCT suite

GSNAP and GMAP are a pair of tools to align short-read data written by Tom Wu. This package provides convenience methods to work with GMAP and GSNAP from within R. In addition, it provides methods to tally alignment results on a per-nucleotide basis using the bam_tally tool.

Getting started

Package details

AuthorCory Barr, Thomas Wu, Michael Lawrence
Bioconductor views Alignment
MaintainerMichael Lawrence <[email protected]>
LicenseArtistic-2.0
Version1.19.1
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
install.packages("devtools")
library(devtools)
install_github("Bioconductor-mirror/gmapR")
Bioconductor-mirror/gmapR documentation built on June 1, 2017, 9:46 a.m.