API for Bioconductor-mirror/h5vc
Managing alignment tallies using a hdf5 backend

Global functions
applyTallies Man page Source code
bases Man page
batchTallies Man page Source code
batchTallyParam Man page Source code
binGenome Man page Source code
binnedAFs Man page Source code
binnedCoverage Man page Source code
blockify Source code
callDeletionsPaired Man page
callVariantsPaired Man page Source code
callVariantsPairedFisher Man page Source code
callVariantsSingle Man page Source code
collectTallies Man page Source code
defineBlocks Man page Source code
encodeDNAString Man page Source code
formatGenomicPosition Man page Source code
geom_h5vc Man page Source code
getChromSize Man page Source code
getDimensions Source code
getSampleData Man page Source code
h5dapply Man page
h5dapply,GRanges-method Man page
h5dapply,IRanges-method Man page
h5dapply,numeric-method Man page
h5dapplyIRanges Source code
h5readBlock Man page Source code
h5vc Man page
h5vc-package Man page
mergeByGene Source code
mergeTallies Man page Source code
mergeTallyFiles Man page Source code
mismatchPlot Man page Source code
mutationSpectrum Man page Source code
plotMutationSpectrum Man page Source code
prepareForHDF5 Man page Source code
prepareTallyFile Man page Source code
processDataForMismatchPlot Source code
rerunBatchTallies Man page Source code
resizeCohort Man page Source code
resubmitProblematicJobs Source code
setSampleData Man page Source code
setUpJobs Source code
tallyBAM Man page Source code
tallyRanges Man page Source code
tallyRangesBatch Man page Source code
tallyRangesToFile Man page Source code
variantCalls Man page
vcConfParams Man page Source code
waitAndCollect Source code
writeReference Man page Source code
writeToTallyFile Man page Source code Source code
Bioconductor-mirror/h5vc documentation built on June 1, 2017, 10:39 a.m.