API for Bioconductor-mirror/hapFabia
hapFabia: Identification of very short segments of identity by descent (IBD) characterized by rare variants in large sequencing data

Global functions
IBDsegment Man page Source code
IBDsegment,ANY-method Man page
IBDsegment,IBDsegment-method Man page
IBDsegment,numeric,numeric,character,numeric,numeric,numeric,num Man page
IBDsegment-class Man page
IBDsegment-method Man page
IBDsegmentLength Man page
IBDsegmentLength,IBDsegment-method Man page
IBDsegmentLength<- Man page
IBDsegmentLength<-,IBDsegment,numeric-method Man page
IBDsegmentList Man page Source code
IBDsegmentList,ANY-method Man page
IBDsegmentList,list,numeric,list-method Man page
IBDsegmentList-class Man page
IBDsegmentList-method Man page
IBDsegmentList2excel Man page
IBDsegmentList2excel,IBDsegmentList,character-method Man page
IBDsegmentList2excel,IBDsegmentList-method Man page
IBDsegmentPos Man page
IBDsegmentPos,IBDsegment-method Man page
IBDsegmentPos<- Man page
IBDsegmentPos<-,IBDsegment,numeric-method Man page
IBDsegments Man page
IBDsegments,IBDsegmentList-method Man page
IBDsegments<- Man page
IBDsegments<-,IBDsegmentList,list-method Man page
ID Man page
ID,IBDsegment-method Man page
ID<- Man page
ID<-,IBDsegment,numeric-method Man page
[ Man page
[,IBDsegmentList,numeric,missing-method Man page
[,IBDsegmentList-method Man page
[<- Man page
[<-,IBDsegmentList,numeric,missing,IBDsegmentList-method Man page
[<-,IBDsegmentList-method Man page
[[ Man page
[[,IBDsegmentList,numeric,missing-method Man page
[[,IBDsegmentList-method Man page
[[<- Man page
[[<-,IBDsegmentList,numeric,missing,IBDsegment-method Man page
[[<-,IBDsegmentList-method Man page
analyzeIBDsegments Man page Source code
bicluster_id Man page
bicluster_id,IBDsegment-method Man page
bicluster_id<- Man page
bicluster_id<-,IBDsegment,numeric-method Man page
chr1ASW1000G Man page
chromosome Man page
chromosome,IBDsegment-method Man page
chromosome<- Man page
chromosome<-,IBDsegment,character-method Man page
compareIBDsegmentLists Man page
compareIBDsegmentLists,IBDsegmentList,ANY,character,ANY,ANY,nume Man page
compareIBDsegmentLists,IBDsegmentList-method Man page
coreClusterIndividuals Man page
coreClusterIndividuals,IBDsegment-method Man page
coreClusterIndividuals<- Man page
coreClusterIndividuals<-,IBDsegment,vector-method Man page
extractIBDsegments Man page
extractIBDsegments,Factorization,list,data.frame,character,matri Man page
extractIBDsegments,Factorization-method Man page
findDenseRegions Man page Source code
hapFabia Man page Source code
hapFabiaVersion Man page Source code
hapRes Man page
histL Man page
histL,Factorization,numeric,ANY,ANY,numeric,numeric-method Man page
histL,Factorization-method Man page
idIndividuals Man page
idIndividuals,IBDsegment-method Man page
idIndividuals<- Man page
idIndividuals<-,IBDsegment,vector-method Man page
identifyDuplicates Man page Source code
individualPerTagSNV Man page
individualPerTagSNV,IBDsegment-method Man page
individualPerTagSNV<- Man page
individualPerTagSNV<-,IBDsegment,vector-method Man page
individuals Man page
individuals,IBDsegment-method Man page
individuals<- Man page
individuals<-,IBDsegment,vector-method Man page
iterateIntervals Man page Source code
labelIndividuals Man page
labelIndividuals,IBDsegment-method Man page
labelIndividuals<- Man page
labelIndividuals<-,IBDsegment,vector-method Man page
lengthList Man page
lengthList,IBDsegmentList-method Man page
lengthList<- Man page
lengthList<-,IBDsegmentList,numeric-method Man page
makePipelineFile Man page Source code
matrixPlot Man page Source code
mergeIBDsegmentLists Man page
mergeIBDsegmentLists,IBDsegmentList,ANY,vector-method Man page
mergeIBDsegmentLists,IBDsegmentList-method Man page
mergedIBDsegmentList Man page
numberIndividuals Man page
numberIndividuals,IBDsegment-method Man page
numberIndividuals<- Man page
numberIndividuals<-,IBDsegment,numeric-method Man page
numbertagSNVs Man page
numbertagSNVs,IBDsegment-method Man page
numbertagSNVs<- Man page
numbertagSNVs<-,IBDsegment,numeric-method Man page
onLoad Source code
onUnload Source code
platformIndividuals Man page
platformIndividuals,IBDsegment-method Man page
platformIndividuals<- Man page
platformIndividuals<-,IBDsegment,vector-method Man page
plot,IBDsegment,missing-method Man page
plot,IBDsegment-method Man page
plot,IBDsegmentList,missing-method Man page
plot,IBDsegmentList-method Man page
plotIBDsegment Man page Source code
plotL Man page
plotL,Factorization,numeric,ANY,ANY,character,numeric,numeric,ch Man page
plotL,Factorization-method Man page
plotLarger Man page
plotLarger,IBDsegment,character,numeric-method Man page
plotLarger,IBDsegment,missing-method Man page
plotLarger,IBDsegment-method Man page
populationIndividuals Man page
populationIndividuals,IBDsegment-method Man page
populationIndividuals<- Man page
populationIndividuals<-,IBDsegment,vector-method Man page
res Man page
setAnnotation Man page
setAnnotation,IBDsegmentList,character-method Man page
setAnnotation,IBDsegmentList-method Man page
setStatistics Man page
setStatistics,IBDsegmentList-method Man page
sim Man page Source code
simu Man page
simulateIBDsegments Man page Source code
simulateIBDsegmentsFabia Man page Source code
split_sparse_matrix Man page Source code
statistics Man page
statistics,IBDsegmentList-method Man page
statistics<- Man page
statistics<-,IBDsegmentList,list-method Man page
summary,IBDsegment-method Man page
summary,IBDsegmentList-method Man page
tagSNVAlleles Man page
tagSNVAlleles,IBDsegment-method Man page
tagSNVAlleles<- Man page
tagSNVAlleles<-,IBDsegment,vector-method Man page
tagSNVAnno Man page
tagSNVAnno,IBDsegment-method Man page
tagSNVAnno<- Man page
tagSNVAnno<-,IBDsegment,vector-method Man page
tagSNVChange Man page
tagSNVChange,IBDsegment-method Man page
tagSNVChange<- Man page
tagSNVChange<-,IBDsegment,vector-method Man page
tagSNVFreq Man page
tagSNVFreq,IBDsegment-method Man page
tagSNVFreq<- Man page
tagSNVFreq<-,IBDsegment,vector-method Man page
tagSNVGroupFreq Man page
tagSNVGroupFreq,IBDsegment-method Man page
tagSNVGroupFreq<- Man page
tagSNVGroupFreq<-,IBDsegment,vector-method Man page
tagSNVNames Man page
tagSNVNames,IBDsegment-method Man page
tagSNVNames<- Man page
tagSNVNames<-,IBDsegment,vector-method Man page
tagSNVPositions Man page
tagSNVPositions,IBDsegment-method Man page
tagSNVPositions<- Man page
tagSNVPositions<-,IBDsegment,vector-method Man page
tagSNVs Man page
tagSNVs,IBDsegment-method Man page
tagSNVs<- Man page
tagSNVs<-,IBDsegment,vector-method Man page
tagSNVsPerIndividual Man page
tagSNVsPerIndividual,IBDsegment-method Man page
tagSNVsPerIndividual<- Man page
tagSNVsPerIndividual<-,IBDsegment,vector-method Man page
toolsFactorizationClass Man page
topLZ Man page
topLZ,Factorization,numeric,character,logical,ANY,ANY-method Man page
topLZ,Factorization,numeric,character,logical,ANY-method Man page
topLZ,Factorization,numeric,character,logical-method Man page
topLZ,Factorization-method Man page
vcftoFABIA Man page Source code
Bioconductor-mirror/hapFabia documentation built on June 1, 2017, 10:40 a.m.