Man pages for Bioconductor-mirror/hiAnnotator
Functions for annotating GRanges objects

cleanColnameClean the supplied string from punctuations and spaces.
doAnnotationAnnotate a GRanges object using one of annotation functions.
genesSample RefSeq genes annotation
get2NearestFeatureGet two nearest upstream and downstream annotation boundary...
getFeatureCountsGet counts of annotation within a defined window around each...
getFeatureCountsBigGet counts of annotation within a defined window around each...
getLowestDistsGet the lowest biological distance from the 5' or 3'...
getNearestFeatureGet nearest annotation boundary for a position range.
getRelevantColFind the column index of interest given the potential...
getSitesInFeatureFind overlapping positions/ranges that match between the...
getUCSCtableObtain a UCSC annotation table given the table & track name.
getWindowLabelGenerate a window size label.
hiAnnotatorAnnotating GRanges objects with hiAnnotator.
makeChunksBreaks two GRanges objects into chunks of N size.
makeGRangesMake a sorted GRanges object from a dataframe.
makeUCSCsessionInitiate UCSC genome browser session given the freeze...
plotdisFeaturePlot distance distribution to a feature boundary.
sitesSample Retrovirus Integration Sites data
sites.ctrlControls for Sample Retrovirus Integration Sites data
Bioconductor-mirror/hiAnnotator documentation built on June 1, 2017, 10:40 a.m.