Bioconductor-mirror/htSeqTools: Quality Control, Visualization and Processing for High-Throughput Sequencing data

We provide efficient, easy-to-use tools for High-Throughput Sequencing (ChIP-seq, RNAseq etc.). These include MDS plots (analogues to PCA), detecting inefficient immuno-precipitation or over-amplification artifacts, tools to identify and test for genomic regions with large accumulation of reads, and visualization of coverage profiles.

Getting started

Package details

AuthorEvarist Planet, Camille Stephan-Otto, Oscar Reina, Oscar Flores, David Rossell
Bioconductor views QualityControl Sequencing
MaintainerOscar Reina <[email protected]>
LicenseGPL (>=2)
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
Bioconductor-mirror/htSeqTools documentation built on June 1, 2017, 10:41 a.m.